Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301D07f
         (342 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16370.1 68418.m01913 AMP-binding protein, putative similar t...    26   5.7  
At5g16340.1 68418.m01910 AMP-binding protein, putative similar t...    26   5.7  
At2g19510.1 68415.m02280 LOB domain family protein / lateral org...    26   7.6  
At1g02230.1 68414.m00161 no apical meristem (NAM) family protein...    26   7.6  
At2g04830.1 68415.m00496 F-box family protein similar to F-box p...    25   10.0 

>At5g16370.1 68418.m01913 AMP-binding protein, putative similar to
           AMP-binding protein GI:1903034 from [Brassica napus];
           contains Pfam AMP-binding domain PF00501; identical to
           cDNA adenosine monophosphate binding protein 5 AMPBP5
           (AMPBP5) GI:20799718
          Length = 552

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 42  NVIIRKFDISLLYLIVKAH 98
           NV +RKFD  L+Y +++ H
Sbjct: 254 NVCLRKFDAPLIYRLIRDH 272


>At5g16340.1 68418.m01910 AMP-binding protein, putative similar to
           AMP-binding protein GI:1903034 from [Brassica napus];
           contains Pfam AMP-binding domain PF00501; identical to
           adenosine monophosphate binding protein 6 AMPBP6
           (AMPBP6) GI:20799720
          Length = 550

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 42  NVIIRKFDISLLYLIVKAH 98
           NV +RKFD  L+Y +++ H
Sbjct: 254 NVCLRKFDAPLIYRLIRDH 272


>At2g19510.1 68415.m02280 LOB domain family protein / lateral organ
           boundaries domain family protein (LBD8) identical to
           SP|Q9ZUP0| Putative LOB domain protein 8 {Arabidopsis
           thaliana}; similar to lateral organ boundaries (LOB)
           domain-containing proteins from Arabidopsis thaliana;
           identical to ASYMMETRIC LEAVES2-like protein 34
           [Arabidopsis thaliana] GI:19919039
          Length = 120

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +1

Query: 178 TKRKMSTSPTMTMMRATGRREKCMTPTSIIIESNVAVN 291
           T     T   + MMR     +K M  TSII+E N   N
Sbjct: 41  TNELFGTPKIIKMMRHAPEEKKQMLATSIIMEGNAWTN 78


>At1g02230.1 68414.m00161 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) protein
          Length = 579

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +1

Query: 166 TNRGTKRKMSTSPTMTMMRATGRREK 243
           TN G  +K  T  TMT+MR  G REK
Sbjct: 83  TNSGFWKK--TGKTMTVMRKRGNREK 106


>At2g04830.1 68415.m00496 F-box family protein similar to F-box
           protein family, AtFBX7 (GI:20197899) [Arabidopsis
           thaliana]; confirmed by FLcDNA GI:16604421; contains
           uncharacterized Arabidoppsis domain shared by 33
           Arabidopsis proteins
          Length = 100

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -2

Query: 170 FVDDLSDRDRHQQQPDYRTHLALSMRFHN*IQQTNIELPNNYIYMKN*MTFYIF 9
           FVDD      H+  PDY+ H++    F   I  + IE P    +  N   ++++
Sbjct: 45  FVDDEDVWPDHKDWPDYKDHVSNCGVFD--IATSKIEWPKKIYFSVNKTQWFVW 96


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,060,727
Number of Sequences: 28952
Number of extensions: 67630
Number of successful extensions: 178
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 409426656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)