Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301D06f
         (437 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli...    28   3.2  
At4g01810.1 68417.m00238 protein transport protein-related relat...    27   4.2  
At1g32200.2 68414.m03961 glycerol-3-phosphate acyltransferase, c...    27   7.3  
At1g32200.1 68414.m03960 glycerol-3-phosphate acyltransferase, c...    27   7.3  

>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein
           helicase, putative 
          Length = 2172

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +1

Query: 103 IALVGRRAYGPPDGEWLP-SPMDFSNARGRA 192
           + + G + Y P  GEW+  SP+D     GRA
Sbjct: 851 VIIKGTQVYNPERGEWMELSPLDVMQMIGRA 881


>At4g01810.1 68417.m00238 protein transport protein-related related
           to Sec23 protein [Homo sapiens] gi|1296664|emb|CAA65774
          Length = 880

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 98  FLLPL*ADEHTAHLMVSGYRRPWTLAMPGAEPSRCL 205
           +L P+ A    AH + S  R P+TL +P A   RCL
Sbjct: 361 YLSPMHASLKVAHEIFSSLR-PYTLNVPEASRDRCL 395


>At1g32200.2 68414.m03961 glycerol-3-phosphate acyltransferase,
           chloroplast (ATS1) identical to SP|Q43307|PLSB_ARATH
           Glycerol-3-phosphate acyltransferase, chloroplast
           precursor (EC 2.3.1.15) (GPAT) (ATS1) {Arabidopsis
           thaliana}; contains Pfam profile PF01553:
           Acyltransferase
          Length = 459

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 115 GRRAYGPPDGEWLPSPMDFSN 177
           GR    P  GEW P+P D S+
Sbjct: 324 GRDRPNPSTGEWFPAPFDASS 344


>At1g32200.1 68414.m03960 glycerol-3-phosphate acyltransferase,
           chloroplast (ATS1) identical to SP|Q43307|PLSB_ARATH
           Glycerol-3-phosphate acyltransferase, chloroplast
           precursor (EC 2.3.1.15) (GPAT) (ATS1) {Arabidopsis
           thaliana}; contains Pfam profile PF01553:
           Acyltransferase
          Length = 459

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 115 GRRAYGPPDGEWLPSPMDFSN 177
           GR    P  GEW P+P D S+
Sbjct: 324 GRDRPNPSTGEWFPAPFDASS 344


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,843,458
Number of Sequences: 28952
Number of extensions: 132105
Number of successful extensions: 213
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)