Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301D01f
         (354 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31120.1 68417.m04417 Skb1 methyltransferase family protein c...    71   3e-13
At2g27120.1 68415.m03259 DNA-directed DNA polymerase epsilon cat...    29   0.67 
At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon cat...    28   2.1  
At5g15220.1 68418.m01783 ribosomal protein L27 family protein ri...    26   6.3  
At5g01620.2 68418.m00078 expressed protein several hypothetical ...    26   6.3  
At5g01620.1 68418.m00077 expressed protein several hypothetical ...    26   6.3  
At4g31120.2 68417.m04418 Skb1 methyltransferase family protein c...    26   6.3  
At4g05100.1 68417.m00758 myb family transcription factor (MYB74)...    26   6.3  
At2g16930.2 68415.m01951 ribosomal protein L27 family protein co...    26   6.3  
At2g16930.1 68415.m01950 ribosomal protein L27 family protein co...    26   6.3  
At1g24420.1 68414.m03077 transferase family protein similar to d...    26   6.3  

>At4g31120.1 68417.m04417 Skb1 methyltransferase family protein
           contains Pfam profile:  PF05185 Skb1 methyltransferase
          Length = 642

 Score = 70.5 bits (165), Expect = 3e-13
 Identities = 28/60 (46%), Positives = 35/60 (58%)
 Frame = +3

Query: 78  PGMISWFPVFIPIKTPMRVQKGDKITATFWRCVDSRRVWYXWVVEVGNRSTPLHNANGRS 257
           P M SWFP+F P++ P+ V     +   FWRC  S +VWY W V     S P+HN NGRS
Sbjct: 579 PNMFSWFPIFFPLRKPVEVHPDTPLEVHFWRCCGSSKVWYEWSVSSPTPS-PMHNTNGRS 637



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 1   HGFGGYFDCTLY 36
           HGF GYFD  LY
Sbjct: 554 HGFAGYFDSVLY 565


>At2g27120.1 68415.m03259 DNA-directed DNA polymerase epsilon
           catalytic subunit, putative similar to SP|Q07864 DNA
           polymerase epsilon, catalytic subunit A (EC 2.7.7.7)
           (DNA polymerase II subunit A) {Homo sapiens}; contains
           Pfam profiles: PF03175 DNA polymerase type B, organellar
           and viral, PF00136 DNA polymerase family B, PF03104 DNA
           polymerase family B, exonuclease domain
          Length = 2138

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 7   FGGYFDCTLYGNEIDQHCSWYTYAQE*SPG 96
           F GYF  T   NE++    W+++ QE  PG
Sbjct: 292 FEGYFKVTNVTNEVELLRKWFSHMQELKPG 321


>At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon
           catalytic subunit, putative similar to SP|Q07864 DNA
           polymerase epsilon, catalytic subunit A (EC 2.7.7.7)
           (DNA polymerase II subunit A) {Homo sapiens}; contains
           Pfam profiles: PF03175 DNA polymerase type B, organellar
           and viral, PF00136 DNA polymerase family B, PF03104 DNA
           polymerase family B, exonuclease domain
          Length = 2271

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 7   FGGYFDCTLYGNEIDQHCSWYTYAQE*SPG 96
           F GYF  T   NE++    W+ + QE  PG
Sbjct: 303 FEGYFKVTNVKNEVELLQRWFYHMQELKPG 332


>At5g15220.1 68418.m01783 ribosomal protein L27 family protein
           ribosomal protein L27, Haemophilus influenzae,
           PIR:F64099
          Length = 154

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -3

Query: 115 IGIKT-GNQEIIPGRMCTRNNADRFH 41
           +G+K  G + +IPG +  R    RFH
Sbjct: 66  LGVKKFGGESVIPGNIIVRQRGTRFH 91


>At5g01620.2 68418.m00078 expressed protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 449

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -2

Query: 170 PPERCCYFITLLYSHWCLNWNKDWKPGDHSWAY 72
           P ++  +F+T+  +H    W+++W PG     Y
Sbjct: 324 PNKKRVFFVTMSPTH---QWSREWNPGSEGNCY 353


>At5g01620.1 68418.m00077 expressed protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 449

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -2

Query: 170 PPERCCYFITLLYSHWCLNWNKDWKPGDHSWAY 72
           P ++  +F+T+  +H    W+++W PG     Y
Sbjct: 324 PNKKRVFFVTMSPTH---QWSREWNPGSEGNCY 353


>At4g31120.2 68417.m04418 Skb1 methyltransferase family protein
           contains Pfam profile:  PF05185 Skb1 methyltransferase
          Length = 584

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 1   HGFGGYFDCTLY 36
           HGF GYFD  LY
Sbjct: 554 HGFAGYFDSVLY 565


>At4g05100.1 68417.m00758 myb family transcription factor (MYB74)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain; identical to   cDNA putative transcription
           factor (MYB74) mRNA, partial cds GI:3941505
          Length = 324

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +2

Query: 50  ISIVPGTHTPRNDLL-VSSLYSN*DTNAS 133
           + I P THTPR DLL +SS+ S+   N+S
Sbjct: 120 MGIDPVTHTPRLDLLDISSILSSSIYNSS 148


>At2g16930.2 68415.m01951 ribosomal protein L27 family protein
           contains Pfam profile PF01016: ribosomal protein L27
          Length = 154

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -3

Query: 115 IGIKT-GNQEIIPGRMCTRNNADRFH 41
           +G+K  G + +IPG +  R    RFH
Sbjct: 66  LGVKKFGGESVIPGNIIVRQRGTRFH 91


>At2g16930.1 68415.m01950 ribosomal protein L27 family protein
           contains Pfam profile PF01016: ribosomal protein L27
          Length = 154

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -3

Query: 115 IGIKT-GNQEIIPGRMCTRNNADRFH 41
           +G+K  G + +IPG +  R    RFH
Sbjct: 66  LGVKKFGGESVIPGNIIVRQRGTRFH 91


>At1g24420.1 68414.m03077 transferase family protein similar to
           deacetylvindoline 4-O-acetyltransferase [Catharanthus
           roseus][GI:4091808][PMID:9681034],
           acetyl-CoA:benzylalcohol acetyltranferase [Clarkia
           concinna][GI:6166330][PMID:10588064]
          Length = 436

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 114 IKTPMRVQKGDKITATFWRCV 176
           +K P RV+    +TA FWRCV
Sbjct: 240 VKNPTRVEA---VTALFWRCV 257


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,154,150
Number of Sequences: 28952
Number of extensions: 164167
Number of successful extensions: 409
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 449370720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)