Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0148.Seq
         (497 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72840.1 68414.m08425 disease resistance protein (TIR-NBS-LRR...    28   3.0  
At3g57140.2 68416.m06362 patatin-related contains Patatin domain...    27   5.3  
At3g57140.1 68416.m06361 patatin-related contains Patatin domain...    27   5.3  

>At1g72840.1 68414.m08425 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1183

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +1

Query: 196 NYVLLSRTHTYRIYGAVMLLCKLCNFLEALKNSTYLPK*N 315
           +YVL S T T R+ G  + LC++ + L  L+NS + P  N
Sbjct: 515 HYVLDSNTGTRRVEGLSLHLCEMADTL-LLRNSVFGPMHN 553


>At3g57140.2 68416.m06362 patatin-related contains Patatin domain
           PF01734
          Length = 801

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 301 GRLNFSTLLKNYIICIVTLLHRICDM 224
           GRL+   L+K YI  + T L  +CDM
Sbjct: 182 GRLHVPRLIKEYIDEVSTQLRMVCDM 207


>At3g57140.1 68416.m06361 patatin-related contains Patatin domain
           PF01734
          Length = 801

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 301 GRLNFSTLLKNYIICIVTLLHRICDM 224
           GRL+   L+K YI  + T L  +CDM
Sbjct: 182 GRLHVPRLIKEYIDEVSTQLRMVCDM 207


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,326,287
Number of Sequences: 28952
Number of extensions: 143802
Number of successful extensions: 284
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)