Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0136.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08030.1 68418.m00934 glycerophosphoryl diester phosphodieste...    29   3.1  
At4g26200.1 68417.m03772 1-aminocyclopropane-1-carboxylate synth...    28   4.1  

>At5g08030.1 68418.m00934 glycerophosphoryl diester
           phosphodiesterase family protein similar to
           glycerophosphodiester phosphodiesterase [Borrelia
           hermsii] GI:1399038; contains Pfam profile PF03009:
           Glycerophosphoryl diester phosphodiesterase family
          Length = 372

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -1

Query: 235 KFPVMRKDAYILVAL---LVVGNTAAIDFYIFCIYVAQWDSGSRVSDKNV 95
           KFP++  D YI +AL    VVG    I   +F     +W  G +  DK V
Sbjct: 153 KFPIITFDEYISIALDAPRVVGIYPEIKNPVFMNQQVKWADGKKFEDKFV 202


>At4g26200.1 68417.m03772 1-aminocyclopropane-1-carboxylate
           synthase, putative / ACC synthase, putative similar to
           ACC synthase from Malus x domestica, GI:1658062
           [U73816], Pyrus pyrifolia GI:4586411
          Length = 447

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 20/78 (25%), Positives = 36/78 (46%)
 Frame = +2

Query: 284 VPIHCDTEHLFTF*AFSSLQNIYSTLNNTIHLITRKLYYNTHTPLIF*LKKKQLLNYVQA 463
           VPIHCD+ + F      +L++ Y T  +    +   L  N   PL   ++KK L + +  
Sbjct: 176 VPIHCDSSNHFQI-TPEALESAYQTARDANIRVRGVLITNPSNPLGATVQKKVLEDLL-- 232

Query: 464 KSSIIXIRNLHKTLDQVF 517
                  +N+H   D+++
Sbjct: 233 --DFCVRKNIHLVSDEIY 248


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,707,336
Number of Sequences: 28952
Number of extensions: 221195
Number of successful extensions: 427
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)