Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0128.Seq
         (459 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22690.1 68418.m02651 disease resistance protein (TIR-NBS-LRR...    28   3.5  
At1g16270.1 68414.m01948 protein kinase family protein contains ...    27   8.1  

>At5g22690.1 68418.m02651 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1008

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 53   SCPENAHTTLNPCVPTCADPELKHT 127
            S PEN H   N   P C  PE +H+
Sbjct: 941  SLPENHHNDPNILAPNCGCPETEHS 965


>At1g16270.1 68414.m01948 protein kinase family protein contains
           PF|00069 Eukaryotic protein kinase domain. ESTs
           gb|H37741, gb|T43005 and gb|AI100340 come from this gene
          Length = 1147

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -3

Query: 340 NVKCALRYKF*-GLKYSLVIVRXTFFIXYNRISVEIASASYSTFGNGHAFSLRVEEVSRI 164
           +VK  L Y    G ++SL  +R       +   +     +Y T  NGHA S    +VSR+
Sbjct: 46  DVKPGLHYSIQTGEEFSLEFLRDRVISQRSANPIAAGDINYPTGYNGHAGSEFGSDVSRM 105

Query: 163 TVAG 152
           ++ G
Sbjct: 106 SMVG 109


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,766,100
Number of Sequences: 28952
Number of extensions: 152702
Number of successful extensions: 344
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)