Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0125.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g29720.1 68414.m03633 protein kinase family protein contains ...    30   1.3  
At4g35520.1 68417.m05049 DNA mismatch repair family protein simi...    29   3.1  
At2g28810.1 68415.m03503 Dof-type zinc finger domain-containing ...    28   4.1  
At3g59660.1 68416.m06656 C2 domain-containing protein / GRAM dom...    27   7.2  

>At1g29720.1 68414.m03633 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 300

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/51 (23%), Positives = 27/51 (52%)
 Frame = +2

Query: 5   DPGVYGVIFQFDXIQXFXTVTTRRGQGLPEETKMMHQQSMMVGDVIPVHPD 157
           DPG+YG  +    ++   T ++    G+ ++T    + S+   D+ P++P+
Sbjct: 235 DPGIYGHDWSISKLRDIDTHSSSSTSGVTDQTTTTMKSSVSGCDLYPLYPE 285


>At4g35520.1 68417.m05049 DNA mismatch repair family protein similar
           to SP|Q9UHC1 DNA mismatch repair protein Mlh3 (MutL
           protein homolog 3) {Homo sapiens}; contains Pfam
           profiles PF02518: ATPase, histidine kinase-, DNA gyrase
           B-, and HSP90-like domain protein, PF01119: DNA mismatch
           repair protein, C-terminal domain
          Length = 1151

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 329 HVPYEERKLDNANTFGEGESLRTCHSITKDTGAHIEISTSK 451
           H+   E++L +A+        RT HS T+D   H + S+ +
Sbjct: 819 HIQETEKRLSSASDLKASAGCRTVHSETQDEDVHEDFSSEE 859


>At2g28810.1 68415.m03503 Dof-type zinc finger domain-containing
           protein similar to zinc finger protein OBP2 GI:5059394
           from [Arabidopsis thaliana]
          Length = 340

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 166 HGXIRMNGYHISNHHGLLMHHF 101
           H  ++ NG  +S HH +L HHF
Sbjct: 28  HHQLQENGSLVSGHHQVLSHHF 49


>At3g59660.1 68416.m06656 C2 domain-containing protein / GRAM
           domain-containing protein low similarity to GLUT4
           vesicle protein [Rattus norvegicus] GI:4193489; contains
           Pfam profiles PF00168: C2 domain, PF02893: GRAM domain
          Length = 594

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 432 MCAPVSLVMEWQVLKDSPSPKVLALSSFRSSY 337
           MC P + V EWQ +  SP  KVL   + +  +
Sbjct: 470 MCPPDTAVTEWQHVVLSPDKKVLVFETVQQPH 501


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,774,099
Number of Sequences: 28952
Number of extensions: 218651
Number of successful extensions: 506
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)