Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0119.Seq
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61010.2 68414.m06870 cleavage and polyadenylation specificit...    31   0.50 
At1g61010.1 68414.m06869 cleavage and polyadenylation specificit...    31   0.50 
At4g26290.1 68417.m03782 expressed protein                             30   1.5  
At5g17890.1 68418.m02098 LIM domain-containing protein / disease...    29   2.0  
At1g59710.1 68414.m06718 expressed protein  contains Pfam profil...    29   2.0  
At1g18265.1 68414.m02278 expressed protein                             29   3.5  
At5g46915.1 68418.m05784 transcriptional factor B3 family protei...    28   6.1  
At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein...    28   6.1  

>At1g61010.2 68414.m06870 cleavage and polyadenylation specificity
           factor, putative similar to cleavage and polyadenylation
           specificity factor 73 kDa subunit [Homo sapiens]
           SWISS-PROT:Q9UKF6
          Length = 693

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = -1

Query: 519 QYDSTTRTTVAPNIRKRS*DLSNQIRLKMKILPPNPKSSQKLMAPTNMKRNQVRINNKK 343
           Q  +  +  + PNI     + +  +RLK K+L   P  + K+M P N +  ++  N++K
Sbjct: 411 QTSTFLKELMPPNIILVHGEANEMMRLKQKLLTEFPDGNTKIMTPKNCESVEMYFNSEK 469


>At1g61010.1 68414.m06869 cleavage and polyadenylation specificity
           factor, putative similar to cleavage and polyadenylation
           specificity factor 73 kDa subunit [Homo sapiens]
           SWISS-PROT:Q9UKF6
          Length = 693

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = -1

Query: 519 QYDSTTRTTVAPNIRKRS*DLSNQIRLKMKILPPNPKSSQKLMAPTNMKRNQVRINNKK 343
           Q  +  +  + PNI     + +  +RLK K+L   P  + K+M P N +  ++  N++K
Sbjct: 411 QTSTFLKELMPPNIILVHGEANEMMRLKQKLLTEFPDGNTKIMTPKNCESVEMYFNSEK 469


>At4g26290.1 68417.m03782 expressed protein 
          Length = 75

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = -1

Query: 633 RSTKAEEGTCQKSQEETHSEQRGRTRSDGATTSNDNDKQYDSTTRTTVAPN 481
           RS ++ +G  ++ +EE   E+    +SD      D D+ +     T + P+
Sbjct: 2   RSERSSKGPFEEEEEEEEEEEASSVKSDEHIEIEDEDETFAEDPETPITPS 52


>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
            resistance protein-related low similarity to disease
            resistance protein RPP4 [Arabidopsis thaliana]
            GI:20270890; contains Pfam profiles PF00412: LIM domain,
            PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1613

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 9/27 (33%), Positives = 21/27 (77%)
 Frame = -2

Query: 638  EHVLQKPKREHVRSHKKKHIQSNEEEQ 558
            +H  ++ +R+H + H+++ I+SNE+E+
Sbjct: 1162 KHADEREQRKHSKDHEEEEIESNEKEE 1188


>At1g59710.1 68414.m06718 expressed protein  contains Pfam profile:
           PF04601 protein of unknown function (DUF569
          Length = 300

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = -2

Query: 632 VLQKPKREHVRSHKKKHIQSNEEEQDLTEQ 543
           + QK K   +RSH  K++ ++E+E+ +T++
Sbjct: 3   IFQKAKAVRLRSHHDKYLVADEDEESVTQE 32


>At1g18265.1 68414.m02278 expressed protein
          Length = 280

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/84 (16%), Positives = 36/84 (42%)
 Frame = -1

Query: 594 QEETHSEQRGRTRSDGATTSNDNDKQYDSTTRTTVAPNIRKRS*DLSNQIRLKMKILPPN 415
           ++  H E+      + + + ND D+  D  T  T+    RKR   +  ++  + +     
Sbjct: 162 EKNHHGEEEESEDEEESQSQNDEDQLLDVITLRTMVKRERKRGDYMKKELEKERRAAESA 221

Query: 414 PKSSQKLMAPTNMKRNQVRINNKK 343
            + +  ++    M+++ V +  K+
Sbjct: 222 AEEAMAMLLKLRMEKSVVEMETKQ 245


>At5g46915.1 68418.m05784 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 288

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
 Frame = -1

Query: 645 DSRARSTKAEEGTCQKSQEETHSEQRGRTRSDGATTSNDNDKQYDSTTRTTVAPNIRKRS 466
           +S  R  K  +   ++SQE   +E+  R R D A  S+    ++ +  +     N+R RS
Sbjct: 145 ESVGRKLKLGKKAAEESQESKRTEKVVRARRDEAGASSSTAVEFTAVFQPAYLYNLRIRS 204

Query: 465 *DLSNQIRLK---MKILPPNPK 409
             + +Q+ ++    K+  PN K
Sbjct: 205 -SVKDQMPVEKTIFKVHHPNGK 225


>At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 735

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 185 PRSYHHGSRCRCLRNCFDYY*NCS 256
           P+ YH+G +    RNCF +   CS
Sbjct: 662 PKCYHYGVQGHIKRNCFRFIRECS 685


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,198,469
Number of Sequences: 28952
Number of extensions: 192434
Number of successful extensions: 741
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)