Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0118.Seq
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)           126   2e-29
At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)           126   2e-29
At4g18440.1 68417.m02736 adenylosuccinate lyase, putative / aden...    27   8.1  

>At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)
          Length = 204

 Score =  126 bits (303), Expect = 2e-29
 Identities = 59/109 (54%), Positives = 74/109 (67%)
 Frame = -1

Query: 582 RPTRPDKARRLGLPC*TRLCCIQNPVRRGGRKRPVAKGATYGKPKSHGVNQLKPTRNLQS 403
           RPTRPDKARRLG          +  VRRGGRKRPV KG  YGKP + GV QLK  R+ +S
Sbjct: 41  RPTRPDKARRLGYKAKQGFVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRS 100

Query: 402 IAEEXXXXXXXXXXXLSSYWVAQDSSYKYFEVILVDPSHKAIRRDPKIN 256
           +AEE           ++SYW+ +DS+YKY+E+ILVDP+H A+R DP+IN
Sbjct: 101 VAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIILVDPAHNAVRNDPRIN 149



 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 31/55 (56%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
 Frame = -3

Query: 253 IVNAVHKHREMRGLTSAGRSSRGL-GKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 92
           I N VHKHRE+RGLTS G+ +RGL GKGH   + +  SRRA W + N++ LRR R
Sbjct: 151 ICNPVHKHRELRGLTSEGKKNRGLRGKGHNNHKNR-PSRRATWKKNNSISLRRYR 204


>At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)
          Length = 204

 Score =  126 bits (303), Expect = 2e-29
 Identities = 59/109 (54%), Positives = 74/109 (67%)
 Frame = -1

Query: 582 RPTRPDKARRLGLPC*TRLCCIQNPVRRGGRKRPVAKGATYGKPKSHGVNQLKPTRNLQS 403
           RPTRPDKARRLG          +  VRRGGRKRPV KG  YGKP + GV QLK  R+ +S
Sbjct: 41  RPTRPDKARRLGYKAKQGFVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRS 100

Query: 402 IAEEXXXXXXXXXXXLSSYWVAQDSSYKYFEVILVDPSHKAIRRDPKIN 256
           +AEE           ++SYW+ +DS+YKY+E+ILVDP+H A+R DP+IN
Sbjct: 101 VAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIILVDPAHNAVRNDPRIN 149



 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 32/55 (58%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
 Frame = -3

Query: 253 IVNAVHKHREMRGLTSAGRSSRGL-GKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 92
           I N VHKHRE+RGLTS G+ +RGL GKGH   + +  SRRA W + N+L LRR R
Sbjct: 151 ICNPVHKHRELRGLTSEGKKNRGLRGKGHNNHKNR-PSRRATWKKNNSLSLRRYR 204


>At4g18440.1 68417.m02736 adenylosuccinate lyase, putative /
           adenylosuccinase, putative similar to SP|P25739
           Adenylosuccinate lyase (EC 4.3.2.2) (Adenylosuccinase)
           {Escherichia coli}; contains Pfam profile PF00206: Lyase
          Length = 536

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
 Frame = -1

Query: 207 RLVAAPEVSARDIDTLKQREAHAGQLGSDATLFN-YVANDKHLSKTVSDFPFAYFCMQME 31
           +LV + +V+A  +D +  R+     L + + L   Y +  K L+ ++S+F   YF + +E
Sbjct: 56  KLVTSTKVTA--MDGVSSRDLEMSNLTALSPLDGRYWSKVKDLASSLSEFGLIYFRVFVE 113

Query: 30  SQWVNKI 10
            +W+ K+
Sbjct: 114 IKWLLKL 120


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,333,709
Number of Sequences: 28952
Number of extensions: 285576
Number of successful extensions: 688
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)