Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0116.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40810.1 68418.m04955 cytochrome c1, putative cytochrome c1, ...    54   1e-07
At3g27240.1 68416.m03405 cytochrome c1, putative cytochrome c1, ...    53   1e-07
At1g80870.1 68414.m09489 protein kinase family protein contains ...    28   5.4  

>At5g40810.1 68418.m04955 cytochrome c1, putative cytochrome c1,
           heme protein, mitochondrial precursor (Clone PC13III)
           [Solanum tuberosum] SWISS-PROT:P25076
          Length = 307

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 24/53 (45%), Positives = 33/53 (62%)
 Frame = -2

Query: 513 FLKWCSEPELDDRRQMTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKLAYKPVS 355
           FL W +EPE+++R+ M  K I + S+      YY+R KWS LKSRKL    V+
Sbjct: 255 FLSWAAEPEMEERKLMGFKWIFLLSLALLQAAYYRRLKWSVLKSRKLVLDVVN 307



 Score = 36.3 bits (80), Expect = 0.016
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = -3

Query: 572 LEYSDGTPATASQLAKDVATF*NGAQNP 489
           +EY DGTPAT +Q+ KDV +F + A  P
Sbjct: 235 VEYEDGTPATEAQMGKDVVSFLSWAAEP 262


>At3g27240.1 68416.m03405 cytochrome c1, putative cytochrome c1,
           heme protein, mitochondrial precursor (Clone PC13III)
           [Solanum tuberosum] SWISS-PROT:P25076
          Length = 307

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 24/53 (45%), Positives = 33/53 (62%)
 Frame = -2

Query: 513 FLKWCSEPELDDRRQMTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKLAYKPVS 355
           FL W +EPE+++R+ M  K I + S+      YY+R KWS LKSRKL    V+
Sbjct: 255 FLAWAAEPEMEERKLMGFKWIFLLSLALLQAAYYRRLKWSVLKSRKLVLDVVN 307



 Score = 32.7 bits (71), Expect = 0.19
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 572 LEYSDGTPATASQLAKDVATF*NGAQNP 489
           +EY DG PAT +Q+ KD+ +F   A  P
Sbjct: 235 VEYEDGVPATEAQMGKDIVSFLAWAAEP 262


>At1g80870.1 68414.m09489 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 692

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -2

Query: 342 PTTYK*QNKCFRQIFFFYRHSNMLIVYN*IIYFIYHRVFTLLH 214
           PT  K  +   + +F     S+ L+++  I+YFIYH   +LL+
Sbjct: 7   PTRPKLFHNRTKTLFLILTISSSLVIFFAILYFIYHLWISLLN 49


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,210,494
Number of Sequences: 28952
Number of extensions: 238478
Number of successful extensions: 603
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)