Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0021.Seq
         (409 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   0.52 
At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ...    30   0.69 
At4g38560.1 68417.m05459 expressed protein                             28   2.8  
At3g05660.1 68416.m00630 disease resistance family protein conta...    28   2.8  
At3g56900.1 68416.m06329 aladin-related / adracalin-related weak...    27   4.8  
At1g14270.1 68414.m01692 CAAX amino terminal protease family pro...    27   4.8  
At5g49310.1 68418.m06102 importin alpha-1 subunit, putative simi...    26   8.5  

>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 30.3 bits (65), Expect = 0.52
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 261 LSNSSKLTTSDARPSVDWF*SNKSTHPITGQSSD 160
           +S+S     S  RPS+DWF  N+S +  +  SS+
Sbjct: 221 VSDSDLSFVSSDRPSMDWFEDNRSNYATSSSSSE 254


>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
           SP|P18708 Vesicular-fusion protein NSF
           (N-ethylmaleimide-sensitive fusion protein)
           (NEM-sensitive fusion protein) {Cricetulus griseus};
           contains Pfam profiles PF00004: ATPase AAA family,
           PF02359: Cell division protein 48 (CDC48) N-terminal
           domain; contains non-consensus AT-AC splice sites at
           intron 2
          Length = 742

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = +2

Query: 200 DQNQSTEGLASE--VVNFDELDNFCRSHG 280
           +Q+Q T G ASE  V+ FDE+D  C+S G
Sbjct: 307 EQDQRTLGDASELHVIIFDEIDAICKSRG 335


>At4g38560.1 68417.m05459 expressed protein
          Length = 521

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 7   SYMLVSKIKPCMSQCKPY*GDTANGSIYQFWFLRSYSVTWITVVILEL 150
           SY + + +   + +     GD A+GS  Q    +SYS+  +  V+LEL
Sbjct: 341 SYKVRASVSSTLQKILDKHGDIASGSKLQSLRTKSYSLETLAAVVLEL 388


>At3g05660.1 68416.m00630 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 883

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 188 VLLLDQNQSTEGLASEVVNFDELDNFCRSHGQVPAT 295
           +L LD N+ +  L  EV+N  +L     SH Q   T
Sbjct: 211 ILRLDNNKLSGNLPLEVINLTKLSEISLSHNQFTGT 246


>At3g56900.1 68416.m06329 aladin-related / adracalin-related weak
           similarity to SP|Q9NRG9 Aladin (Adracalin) (GL003) {Homo
           sapiens}; non-consensus AT-AC splice sites at intron 6
          Length = 447

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 253 IG*LLQIAWSSTGDXIFQMSALSTFDGSFC 342
           +G +  + WS TGD  F     + FDG+FC
Sbjct: 254 LGGISMLKWSPTGDYFF----AARFDGTFC 279


>At1g14270.1 68414.m01692 CAAX amino terminal protease family
           protein contains Pfam profile PF02517: CAAX amino
           terminal protease family
          Length = 353

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 5   VVICLSQRLSHACLSASRIKAIPRMAQY 88
           ++ CLSQ  S  CLS SR   +P+   Y
Sbjct: 18  IISCLSQSSSLLCLSDSRRLILPKTCTY 45


>At5g49310.1 68418.m06102 importin alpha-1 subunit, putative similar
           to importin alpha-1 subunit (Karyopherin alpha-1
           subunit, KAP alpha) [Arabidopsis thaliana]
           SWISS-PROT:Q96321
          Length = 519

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 227 RGPPSIGFDLIKALIPSLVRVL 162
           RG PS  FDL+K ++P L R++
Sbjct: 228 RGKPSPPFDLVKHVLPVLKRLV 249


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,850,974
Number of Sequences: 28952
Number of extensions: 136330
Number of successful extensions: 268
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)