Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0107
         (616 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g15900.1 68415.m01822 phox (PX) domain-containing protein wea...    28   4.3  
At1g73500.1 68414.m08509 mitogen-activated protein kinase kinase...    27   7.5  
At5g10510.1 68418.m01217 ovule development protein, putative sim...    27   9.9  
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ...    27   9.9  
At2g02450.2 68415.m00185 no apical meristem (NAM) family protein...    27   9.9  
At2g02450.1 68415.m00184 no apical meristem (NAM) family protein...    27   9.9  
At1g10750.1 68414.m01229 expressed protein similar to gi 3128199...    27   9.9  

>At2g15900.1 68415.m01822 phox (PX) domain-containing protein weak
           similarity to SP|Q9Y5W8 Sorting nexin 13 {Homo sapiens};
           contains Pfam profiles PF00787: PX domain, PF02194: PXA
           domain
          Length = 1009

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +1

Query: 160 CWLQQQHPAHQPSQWKQQLCWYLGLGCRLREDSDAASGANNQQKR 294
           CWL+ +    Q  +W Q + W  G+      DS  AS   +  ++
Sbjct: 860 CWLRNEDTIAQGIRWAQDILWPNGVFFTRLNDSQEASDETDPSEK 904


>At1g73500.1 68414.m08509 mitogen-activated protein kinase kinase
           (MAPKK), putative (MKK9) mitogen-activated protein
           kinase kinase (MAPKK) family, PMID:12119167
          Length = 310

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 283 QQKRQVSLQVITNAVCARTYGNSVIIGSTLCVSGANGRSTC 405
           +++RQ++L++    +  R +  S    +T  V+G NG S C
Sbjct: 5   RERRQLNLRLPLPPISDRRFSTSSSSATTTTVAGCNGISAC 45


>At5g10510.1 68418.m01217 ovule development protein, putative
           similar to ovule development protein aintegumenta
           (GI:1209099) [Arabidopsis thaliana]
          Length = 566

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 71  HQGHTSSVHLHGSYNMN-NLNNDVAIINHNHVGFNNNIQRIN 193
           H G T ++ L  + N N N  ND    N NH   NNN +RIN
Sbjct: 175 HGGSTGALSLGVNVNNNTNHRND----NDNHYRGNNNGERIN 212


>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 1056

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 13  TPRLVSSPSLLVQLTSSPAAPGSH 84
           TP L+++ + ++  TS PAAP SH
Sbjct: 795 TPELLATLASILPATSQPAAPESH 818


>At2g02450.2 68415.m00185 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain
          Length = 414

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 18/64 (28%), Positives = 27/64 (42%)
 Frame = +2

Query: 11  ERPGSSVHPRFWYS*HLLRRHQGHTSSVHLHGSYNMNNLNNDVAIINHNHVGFNNNIQRI 190
           +RPG   HP    S  L  RH  H SS     +      ++  +  + N++  NNNI  +
Sbjct: 197 KRPGVEDHPSVPRS--LSTRHHNHNSSTSSRLALRQQQHHSSSSNHSDNNLNNNNNINNL 254

Query: 191 NLAS 202
              S
Sbjct: 255 EKLS 258


>At2g02450.1 68415.m00184 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain
          Length = 379

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 18/64 (28%), Positives = 27/64 (42%)
 Frame = +2

Query: 11  ERPGSSVHPRFWYS*HLLRRHQGHTSSVHLHGSYNMNNLNNDVAIINHNHVGFNNNIQRI 190
           +RPG   HP    S  L  RH  H SS     +      ++  +  + N++  NNNI  +
Sbjct: 197 KRPGVEDHPSVPRS--LSTRHHNHNSSTSSRLALRQQQHHSSSSNHSDNNLNNNNNINNL 254

Query: 191 NLAS 202
              S
Sbjct: 255 EKLS 258


>At1g10750.1 68414.m01229 expressed protein similar to gi 3128199
           F4I1.5 putative proteinase from Arabidopsis thaliana BAC
           gb AC004521
          Length = 467

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 276 QQPTKTPSEPPGHHQRRLRP 335
           Q+P   P  P GH++R LRP
Sbjct: 147 QKPLDPPERPRGHNRRGLRP 166


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,694,251
Number of Sequences: 28952
Number of extensions: 168533
Number of successful extensions: 560
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)