Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0105
(502 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri... 167 4e-42
At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri... 166 8e-42
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 31 0.58
At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protei... 30 0.76
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si... 29 2.3
At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6 ... 28 3.1
At1g04110.1 68414.m00400 subtilase family protein contains simil... 28 3.1
At1g23060.2 68414.m02882 expressed protein Location of EST gb|T2... 28 4.1
At1g23060.1 68414.m02883 expressed protein Location of EST gb|T2... 28 4.1
At1g43730.1 68414.m05028 hypothetical protein 27 5.4
At5g02920.1 68418.m00235 F-box family protein low similarity to ... 27 7.1
At4g15880.1 68417.m02413 Ulp1 protease family protein contains P... 27 7.1
At4g04970.1 68417.m00722 callose synthase, putative / 1,3-beta-g... 27 7.1
At3g22540.1 68416.m02848 expressed protein 27 7.1
At1g56020.1 68414.m06431 expressed protein 27 7.1
At1g06130.2 68414.m00643 hydroxyacylglutathione hydrolase, putat... 27 7.1
At1g06130.1 68414.m00642 hydroxyacylglutathione hydrolase, putat... 27 7.1
At1g02020.2 68414.m00122 nitroreductase family protein contains ... 27 7.1
At1g02020.1 68414.m00121 nitroreductase family protein contains ... 27 7.1
At5g28615.1 68418.m03493 hypothetical protein 27 9.4
At2g39940.1 68415.m04908 coronatine-insensitive 1 / COI1 (FBL2) ... 27 9.4
At1g68780.1 68414.m07862 leucine-rich repeat family protein cont... 27 9.4
At1g02080.1 68414.m00130 transcriptional regulator-related conta... 27 9.4
>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
Length = 197
Score = 167 bits (406), Expect = 4e-42
Identities = 85/150 (56%), Positives = 105/150 (70%)
Frame = +1
Query: 13 MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKVCS* 192
MVN R + KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+YTL+RIR
Sbjct: 1 MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARE 60
Query: 193 APHPRGEGPQEIVRR*CPSTSLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKSGL 372
+ P+ I + R G+LDE Q KLDYVL L +E+FLERRLQT VFKSG+
Sbjct: 61 LLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGM 120
Query: 373 AKSIHHARILIRQRHIRVRKQVVQHPMHLL 462
AKSIHHAR+LIRQRHIRV +Q+V P ++
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQLVNIPSFMV 150
>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
Length = 198
Score = 166 bits (403), Expect = 8e-42
Identities = 81/141 (57%), Positives = 102/141 (72%)
Frame = +1
Query: 40 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKVCS*APHPRGEGP 219
+ KT+ PRRP+EK RLD ELK++GEYGLRNKRE+WRV+Y+L+RIR + P
Sbjct: 10 YGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSP 69
Query: 220 QEIVRR*CPSTSLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKSGLAKSIHHARI 399
+ I + R G+LDE Q KLDYVL L +E+FLERRLQT VFKSG+AKSIHH+R+
Sbjct: 70 RRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRV 129
Query: 400 LIRQRHIRVRKQVVQHPMHLL 462
LIRQRHIRV KQ+V P ++
Sbjct: 130 LIRQRHIRVGKQLVNIPSFMV 150
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 30.7 bits (66), Expect = 0.58
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +3
Query: 285 TDETRLCAWSED*GLLGASSADAGVQIW 368
T E CAWS LL + S DA +IW
Sbjct: 265 TSEVCACAWSPSASLLASGSGDATARIW 292
>At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protein
40S RIBOSOMAL PROTEINs - different species
Length = 182
Score = 30.3 bits (65), Expect = 0.76
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Frame = +1
Query: 256 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKSGLAKSIHHARILIRQRHIRVRKQ 435
L +GV+ ++ L L + F RRL T + A+ A I Q H+RV +
Sbjct: 81 LYNMGVIPTRK-SLTLTERLSVSSFCRRRLSTVLVHLKFAEHHKEAVTYIEQGHVRVGPE 139
Query: 436 VVQHPMHLLCA-WTLASTWTDCS 501
+ P L+ TW D S
Sbjct: 140 TITDPAFLVTRNMEDFITWVDSS 162
>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
similar to chloroplast membrane protein (ALBINO3)
(GI:3927828) [Arabidopsis thaliana]
Length = 1013
Score = 28.7 bits (61), Expect = 2.3
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +1
Query: 46 KTYVTPRR-PFEKARLDQ-ELKIIGEYGLRNKREVWRVKYT 162
K ++ PRR P + Q E K EYG RN E W + T
Sbjct: 479 KYFIKPRRHPESECSATQTEYKFTSEYGKRNSSECWAMTTT 519
>At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to fizzy-related
protein (GI:5813825) Drosophila melanogaster,
PID:g2326419;
Length = 518
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -3
Query: 263 RTRDVEGHYLR--TISWGPSPRG*GAHEQTLRIRASVYLTRHTSRL 132
RTR +EGH LR ++WG S G+ ++++ R H S+L
Sbjct: 286 RTRTMEGHRLRVGALAWGSSVLSSGSRDKSILQRDIRCQEDHVSKL 331
>At1g04110.1 68414.m00400 subtilase family protein contains
similarity to subtilisin-like protease GI:3687307 from
[Lycopersicon esculentum]
Length = 775
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -2
Query: 297 EFHLFFIQYSNTNQRRRRALPSNNLLGSFSSRVRSSRADLTDTSERV 157
++HL F+Q + PS+ LL S+ S + A LT++ +
Sbjct: 47 DWHLSFLQEAVLGVEEEEEEPSSRLLYSYGSAIEGFAAQLTESEAEI 93
>At1g23060.2 68414.m02882 expressed protein Location of EST
gb|T22158 and gb|AA395675
Length = 306
Score = 27.9 bits (59), Expect = 4.1
Identities = 18/87 (20%), Positives = 38/87 (43%)
Frame = -2
Query: 501 RAVSPCACQSPGAQ*MHGMLHNLLADTNMPLPDQNSGMMDGLRQARFEHLRLQTTLQEVL 322
R V ACQ+P +L LLA + R + + +++ +++ L
Sbjct: 150 RIVETVACQAPATSKKTEILTPLLATREKKTSTNGFSLRSNERAEKKKEEKVEAVVRKAL 209
Query: 321 NLQTKHIIEFHLFFIQYSNTNQRRRRA 241
NL+ + + + Q+++T Q + +A
Sbjct: 210 NLKARPLPKSTQARPQHTSTGQAKAKA 236
>At1g23060.1 68414.m02883 expressed protein Location of EST
gb|T22158 and gb|AA395675
Length = 367
Score = 27.9 bits (59), Expect = 4.1
Identities = 18/87 (20%), Positives = 38/87 (43%)
Frame = -2
Query: 501 RAVSPCACQSPGAQ*MHGMLHNLLADTNMPLPDQNSGMMDGLRQARFEHLRLQTTLQEVL 322
R V ACQ+P +L LLA + R + + +++ +++ L
Sbjct: 211 RIVETVACQAPATSKKTEILTPLLATREKKTSTNGFSLRSNERAEKKKEEKVEAVVRKAL 270
Query: 321 NLQTKHIIEFHLFFIQYSNTNQRRRRA 241
NL+ + + + Q+++T Q + +A
Sbjct: 271 NLKARPLPKSTQARPQHTSTGQAKAKA 297
>At1g43730.1 68414.m05028 hypothetical protein
Length = 320
Score = 27.5 bits (58), Expect = 5.4
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 403 SKFWHDGWTSPGQI 362
+KFWHD WT G +
Sbjct: 77 AKFWHDNWTGHGPL 90
>At5g02920.1 68418.m00235 F-box family protein low similarity to
ribosomal RNA apurinic site specific lyase [Triticum
aestivum] GI:6505722; contains F-box domain Pfam:PF00646
Length = 345
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 355 PASADDAPRSPQSSDQAHNRVSSVFHPVLQYEPET 251
P+ D P +SSD N + H +L + PET
Sbjct: 14 PSHRFDRPLIRRSSDSISNLPDEILHHILSFIPET 48
>At4g15880.1 68417.m02413 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; low similarity to
sentrin/SUMO-specific protease [Homo sapiens]
GI:6906859; identical to cDNA hypothetical protein,
partial (1189 bp) GI:2326349
Length = 489
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 31 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREV 144
P K PR PF D+E ++ + RN+R+V
Sbjct: 242 PKTVEKRVEVPREPFIPLTEDEEAEVYRAFSGRNRRKV 279
>At4g04970.1 68417.m00722 callose synthase, putative /
1,3-beta-glucan synthase, putative similar to callose
synthase 1 catalytic subunit GI:13649388 from
[Arabidopsis thaliana]
Length = 1768
Score = 27.1 bits (57), Expect = 7.1
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +1
Query: 307 LGLKIEDFLERRLQTQVFKSGLAKSIHHARILIRQRHIRVRKQV-----VQHPMHLLCAW 471
L ++I++ +E T+V+K + IH I + +R + K+V + ++ LCAW
Sbjct: 748 LFMEIDENVENEKITEVYKLTVLLRIHEKLISLLERLMDPEKKVFRIVNILQALYELCAW 807
Query: 472 TLAST 486
T
Sbjct: 808 EFPKT 812
>At3g22540.1 68416.m02848 expressed protein
Length = 110
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 104 RSSESTVSATSVKYGASNTRSL 169
RS E T S+TS K+G SNT L
Sbjct: 88 RSGELTNSSTSKKFGRSNTTKL 109
>At1g56020.1 68414.m06431 expressed protein
Length = 398
Score = 27.1 bits (57), Expect = 7.1
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = -1
Query: 433 ACGHEYAFAGSKFWHDGWTSPGQI*TPASADDAPRSPQSSDQAHNRVSSVFHPVLQYE 260
AC + KF GWTSP + DD RS Q + + + PV+ +E
Sbjct: 4 ACVKSAGVSPEKFSSYGWTSPRM---SLTRDDNRRSSSVDKQQSDPLPEIQDPVVDFE 58
>At1g06130.2 68414.m00643 hydroxyacylglutathione hydrolase, putative
/ glyoxalase II, putative similar to glyoxalase II
isozyme GB:AAC49865 GI:2570338 from [Arabidopsis
thaliana]
Length = 330
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 502 QSSQSMCLPESRRTINAWDVAQLACGHEYAFAGSKF 395
+ + L +R I D + CGHEY + SKF
Sbjct: 217 EGTPEQMLASLQRIIALPDDTSVYCGHEYTLSNSKF 252
>At1g06130.1 68414.m00642 hydroxyacylglutathione hydrolase, putative
/ glyoxalase II, putative similar to glyoxalase II
isozyme GB:AAC49865 GI:2570338 from [Arabidopsis
thaliana]
Length = 331
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 502 QSSQSMCLPESRRTINAWDVAQLACGHEYAFAGSKF 395
+ + L +R I D + CGHEY + SKF
Sbjct: 218 EGTPEQMLASLQRIIALPDDTSVYCGHEYTLSNSKF 253
>At1g02020.2 68414.m00122 nitroreductase family protein contains
Pfam PF00881: nitroreductase family protein profile;
contains Prosite PS00343: Gram-positive cocci surface
proteins 'anchoring' hexapeptide
Length = 543
Score = 27.1 bits (57), Expect = 7.1
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +3
Query: 354 GVQIWPGEVHPSCQNFDPAKAY-SCPQASCATSHAFIVRLDSGKH 485
G WP V+PS N P +AY P + AF+ +H
Sbjct: 164 GSSTWPLRVNPSSGNLHPTEAYLIAPPIPSLSQSAFVSHYAPKEH 208
>At1g02020.1 68414.m00121 nitroreductase family protein contains
Pfam PF00881: nitroreductase family protein profile;
contains Prosite PS00343: Gram-positive cocci surface
proteins 'anchoring' hexapeptide
Length = 642
Score = 27.1 bits (57), Expect = 7.1
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +3
Query: 354 GVQIWPGEVHPSCQNFDPAKAY-SCPQASCATSHAFIVRLDSGKH 485
G WP V+PS N P +AY P + AF+ +H
Sbjct: 164 GSSTWPLRVNPSSGNLHPTEAYLIAPPIPSLSQSAFVSHYAPKEH 208
>At5g28615.1 68418.m03493 hypothetical protein
Length = 149
Score = 26.6 bits (56), Expect = 9.4
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 403 SKFWHDGWTSPGQI 362
+KFWHD WT G +
Sbjct: 9 AKFWHDDWTGLGPL 22
>At2g39940.1 68415.m04908 coronatine-insensitive 1 / COI1 (FBL2) E3
ubiquitin ligase SCF complex F-box subunit; identical to
LRR-containing F-box protein GI:3158394 from
[Arabidopsis thaliana]
Length = 592
Score = 26.6 bits (56), Expect = 9.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 439 VQHPMHLLCAWTLASTWTDC 498
++HP H+L ++LA TDC
Sbjct: 562 MEHPAHILAYYSLAGQRTDC 581
>At1g68780.1 68414.m07862 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to disease
resistance protein [Lycopersicon esculentum]
gi|3894383|gb|AAC78591
Length = 432
Score = 26.6 bits (56), Expect = 9.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 418 IRVRKQVVQHPMHLLCAWTLASTWT 492
+R+RK+ QH + LLC W L W+
Sbjct: 4 LRLRKK--QHLVFLLCVWCLVVDWS 26
>At1g02080.1 68414.m00130 transcriptional regulator-related contains
Pfam PF04054: CCR4-Not complex component, Not1; contains
TIGRFAM TIGR01612: reticulocyte binding protein; similar
to General negative regulator of transcription subunit 1
(SP:P25655) {Saccharomyces cerevisiae}; Location of ESTs
gb|T44328 and gb|AA395265
Length = 2378
Score = 26.6 bits (56), Expect = 9.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 4 VAKMVNNRVPSVFSKTYVTPRRPFEKARLDQE 99
VA N VPS YV P+R + +D+E
Sbjct: 1202 VANSPNTDVPSKLLSQYVAPQRVYTNTLMDEE 1233
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,424,085
Number of Sequences: 28952
Number of extensions: 232927
Number of successful extensions: 781
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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