Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30098
         (532 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26190.1 68418.m03116 DC1 domain-containing protein contains ...    28   3.4  
At1g23140.1 68414.m02892 C2 domain-containing protein similar to...    28   4.5  
At5g63950.1 68418.m08030 SNF2 domain-containing protein / helica...    27   7.9  

>At5g26190.1 68418.m03116 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 556

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 153 CFLCSRPSDRSGPGCVSTDRNVRSKCRCSNVSCSSHYDAQLTAFFI 16
           C  C RPS+    G      NV+   RC+ +S   ++D+ L + FI
Sbjct: 350 CVACQRPSN----GFRYESGNVKLDVRCATISDEFNHDSHLHSLFI 391


>At1g23140.1 68414.m02892 C2 domain-containing protein similar to
           zinc finger and C2 domain protein GI:9957238 from
           [Arabidopsis thaliana]
          Length = 165

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -2

Query: 147 LCSRPSDRSGPGCVSTDRNVRSKCRCSNVSCSSHYDAQLTAFFIDP 10
           L SR S+ S P  V T  + + K R    SC+  +D +LT    DP
Sbjct: 18  LVSRDSNTSDPFVVVTMGSQKLKTRGVENSCNPEWDDELTLGINDP 63


>At5g63950.1 68418.m08030 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to SP|Q03468
           Excision repair protein ERCC-6 (Cockayne syndrome
           protein CSB) {Homo sapiens}; contains PFam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 1090

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 504 ASHRRRRRILNND*YNVNNRITKPRRQ 424
           ASHRR+ R LN+  Y++   ++ P RQ
Sbjct: 6   ASHRRKPRSLNDRHYSILQDLSAPPRQ 32


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,960,327
Number of Sequences: 28952
Number of extensions: 179627
Number of successful extensions: 432
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)