Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30096
(669 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g42050.1 68416.m04311 vacuolar ATP synthase subunit H family ... 58 7e-09
At4g31490.1 68417.m04473 coatomer beta subunit, putative / beta-... 37 0.011
At4g31480.1 68417.m04472 coatomer beta subunit, putative / beta-... 37 0.011
At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein (HS... 30 1.2
At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein ... 29 2.8
At5g12290.1 68418.m01445 expressed protein similarity to NCA2 pr... 29 3.7
At2g19920.1 68415.m06036 RNA-dependent RNA polymerase family pro... 29 3.7
At1g48760.2 68414.m05457 delta-adaptin, putative similar to SP|O... 29 3.7
At1g48760.1 68414.m05456 delta-adaptin, putative similar to SP|O... 29 3.7
At5g02100.1 68418.m00131 oxysterol-binding family protein simila... 28 4.9
At1g66730.1 68414.m07585 ATP dependent DNA ligase family protein... 28 4.9
At2g45660.1 68415.m05677 MADS-box protein (AGL20) 28 6.5
At4g31570.1 68417.m04483 expressed protein 27 8.5
At1g54990.1 68414.m06281 expressed protein 27 8.5
>At3g42050.1 68416.m04311 vacuolar ATP synthase subunit H family
protein identical to probable vacuolar ATP synthase
subunit H (EC 3.6.3.14)(V-ATPase H subunit) (Vacuolar
proton pump H subunit) (Vacuolar proton pump subunit
SFD) SP:Q9LX65 from [Arabidopsis thaliana]; contains
Pfam PF03224: V-ATPase subunit H
Length = 441
Score = 57.6 bits (133), Expect = 7e-09
Identities = 28/102 (27%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Frame = +3
Query: 81 RFYRELNQRGQKDLPDKNPDACAEVFLNLLTHISKDHTIQYILVLIDDILSEDKSRVKIF 260
R Y + + + L D++ A +F+++L I K+ T++Y+L LI ++LS + +R ++F
Sbjct: 36 RRYDKKPESARAQLLDEDGPAYVHLFVSILRDIFKEETVEYVLALIYEMLSANPTRARLF 95
Query: 261 RETKFSG-NVWQPFLNLLNRQDEFVQHMTARIIAKLACWHPQ 383
+ + + ++PFL LL + + F+Q + +I+A + P+
Sbjct: 96 HDESLANEDTYEPFLRLLWKGNWFIQEKSCKILAWIISARPK 137
>At4g31490.1 68417.m04473 coatomer beta subunit, putative /
beta-coat protein, putative / beta-COP, putative similar
to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
from {Rattus norvegicus} SP|P23514, {Mus musculus}
SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 948
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/80 (23%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = +3
Query: 132 NPDACAEVFLNLLTHI--SKDHTIQYILVLIDDILSEDKSRVKIFRETKFSGNVWQPFLN 305
N + ++F+ ++ ++ S+DHTIQ +L+L +++ + S+ K+ E + Q N
Sbjct: 47 NGETIPQLFITIIRYVLPSEDHTIQKLLLLYLELIEKTDSKGKVLPEMIL---ICQNLRN 103
Query: 306 LLNRQDEFVQHMTARIIAKL 365
L +E+++ +T R + ++
Sbjct: 104 NLQHPNEYIRGVTLRFLCRM 123
>At4g31480.1 68417.m04472 coatomer beta subunit, putative /
beta-coat protein, putative / beta-COP, putative similar
to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
from {Rattus norvegicus} SP|P23514, {Mus musculus}
SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 971
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/80 (23%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = +3
Query: 132 NPDACAEVFLNLLTHI--SKDHTIQYILVLIDDILSEDKSRVKIFRETKFSGNVWQPFLN 305
N + ++F+ ++ ++ S+DHTIQ +L+L +++ + S+ K+ E + Q N
Sbjct: 70 NGETIPQLFITIIRYVLPSEDHTIQKLLLLYLELIEKTDSKGKVLPEMIL---ICQNLRN 126
Query: 306 LLNRQDEFVQHMTARIIAKL 365
L +E+++ +T R + ++
Sbjct: 127 NLQHPNEYIRGVTLRFLCRM 146
>At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein
(HSP18.1-CI) identical to 18.2 kDa class I heat shock
protein (HSP 18.2) (SP:P19037)[Arabidopsis thaliana];
contains Pfam profile: PF00011 Hsp20/alpha crystallin
family
Length = 161
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/94 (23%), Positives = 36/94 (38%)
Frame = +3
Query: 273 FSGNVWQPFLNLLNRQDEFVQHMTARIIAKLACWHPQLMDKSDLHFYLSWLKDQLKTNAE 452
FS ++W PF TAR +A + + H + + L LK
Sbjct: 19 FSQDLWDPFEGFFTPSSALANASTARDVAAFTNARVDWKETPEAHVFKADLPG-LKKEEV 77
Query: 453 EMTAELEHAEQVMLEHEKEKFSDKHKHHKGEGSS 554
++ E ++ Q+ E KE K H+ E +S
Sbjct: 78 KVEVEDKNVLQISGERSKENEEKNDKWHRVERAS 111
>At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domians PF02375: jmjN domain, PF02373:
jmjC domain and PF00096: Zinc finger, C2H2 type
Length = 1327
Score = 29.1 bits (62), Expect = 2.8
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Frame = +3
Query: 216 IDDILSEDKSRVKIFRETKFSGNVWQPFLNLLNRQDEFVQHMTARIIAKLACWHPQLMDK 395
++DIL+E+K+ + RE +W P +LL R + A +A + P + K
Sbjct: 470 VEDILNENKNLSVLLREPGSRLVMWDP--DLLPRHSALA--LAAAGVAGASAVSPPAVAK 525
Query: 396 SDLHFYLSWLKDQLKTN-AEEMTAELEHAEQVMLEHEKEKFSD 521
+L S L+++ KT+ EE++ +E V + + +D
Sbjct: 526 KELEEGHSELQNKEKTSLLEELSLFMEKLNDVYYDDDDGLLND 568
>At5g12290.1 68418.m01445 expressed protein similarity to NCA2
protein, yeast, PIR:S54389~Contains 'Homeobox' domain
signature and profile AA305-328
Length = 602
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +3
Query: 375 HPQLMDKSDLHFYLSWLKDQLKTNAEEMTAELEHAEQVMLEHEKEKFSDKHKHHKG 542
H LM SD+ +W+ D + M+ +H EQ +L E F K HKG
Sbjct: 322 HSSLMGSSDIE---NWVHDAKEAT---MSFFSDHVEQPLLSIRDELFDTFRKRHKG 371
>At2g19920.1 68415.m06036 RNA-dependent RNA polymerase family protein
contains Pfam domain, PF05183: RNA dependent RNA
polymerase
Length = 927
Score = 28.7 bits (61), Expect = 3.7
Identities = 21/98 (21%), Positives = 44/98 (44%)
Frame = +3
Query: 222 DILSEDKSRVKIFRETKFSGNVWQPFLNLLNRQDEFVQHMTARIIAKLACWHPQLMDKSD 401
D+ R K F+ T G ++ ++ N +D T I+KL C+ + + + D
Sbjct: 809 DLFPHYMERNKTFKSTSILGLIFDT-VDFHNAEDT-----TPSGISKLQCFEDEPVSEFD 862
Query: 402 LHFYLSWLKDQLKTNAEEMTAELEHAEQVMLEHEKEKF 515
+ W KD K + M ++ + + +++ K++F
Sbjct: 863 MEKCKLWHKDYRKEMCQAMNSDDDDSCNEVIQKYKQEF 900
>At1g48760.2 68414.m05457 delta-adaptin, putative similar to
SP|O14617 Adapter-related protein complex 3 delta 1
subunit (Delta-adaptin 3) {Homo sapiens}; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 869
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 426 KDQLKTNAEEMTAELEHAEQVMLEHEKEKFSDKHKHHKGEGSS 554
KD+ + N E E + ++ EK K K KGEGSS
Sbjct: 803 KDRYEGNPNSGQQEKEESSRIENHQNSEKKKKKKKKKKGEGSS 845
>At1g48760.1 68414.m05456 delta-adaptin, putative similar to
SP|O14617 Adapter-related protein complex 3 delta 1
subunit (Delta-adaptin 3) {Homo sapiens}; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 869
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 426 KDQLKTNAEEMTAELEHAEQVMLEHEKEKFSDKHKHHKGEGSS 554
KD+ + N E E + ++ EK K K KGEGSS
Sbjct: 803 KDRYEGNPNSGQQEKEESSRIENHQNSEKKKKKKKKKKGEGSS 845
>At5g02100.1 68418.m00131 oxysterol-binding family protein similar
to SWH1 [Saccharomyces cerevisiae] GI:402658; contains
Pfam profile PF01237: Oxysterol-binding protein
Length = 453
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +3
Query: 288 WQPFLNLLNRQDEFVQHMTARIIAKLACWHPQL 386
W+PF +L E H IA+ C HP +
Sbjct: 142 WKPFNPILGETYEMTNHNGINFIAEQVCHHPPM 174
>At1g66730.1 68414.m07585 ATP dependent DNA ligase family protein
contains Pfam profile: PF01068 ATP dependent DNA ligase
domain
Length = 1417
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = -1
Query: 417 RDRSANHFCPSAAGASKLAWQ*CEQSCAGQIHPDGSANSGRAAKRCQRISSHE 259
R+ +H + + + C ++C+ Q S NSG A C + S+ E
Sbjct: 685 REIPGDHAGERGLSSKTIQYPKCSEACSSQEDKKASENSGHAVNICVQTSAEE 737
>At2g45660.1 68415.m05677 MADS-box protein (AGL20)
Length = 214
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 429 DQLKTNAEEMTAELEHAEQVMLEHEKEKFSDKHKHHKGEG 548
+QLK + + AE E + HE E +S+K++ G G
Sbjct: 151 EQLKQKEKALAAENEKLSEKWGSHESEVWSNKNQESTGRG 190
>At4g31570.1 68417.m04483 expressed protein
Length = 2712
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +3
Query: 264 ETKFSGNVWQPFLNLLNRQDEFV---QHMTARIIAKLACWHPQL 386
ET GN+ + +L D+FV H+ ++ LA WH Q+
Sbjct: 2135 ETSSGGNIAEICGSLSQNLDQFVVGVSHLEEKVSKHLATWHDQI 2178
>At1g54990.1 68414.m06281 expressed protein
Length = 473
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +3
Query: 378 PQLMDKSDLHFYLSWLKDQLKTNAEEMTAELEHAEQVMLEHEKEKFSDKHKHHKGEG 548
PQ +L Y+S L + + AE E+V E+ K D H HH G G
Sbjct: 399 PQESKSGELADYISEFVSLLPKSIRRV-AEEPIPEEVQKVLEEAKAGDDHDHHHGHG 454
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,046,731
Number of Sequences: 28952
Number of extensions: 280154
Number of successful extensions: 901
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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