Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30094
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17280.1 68414.m02105 ubiquitin-conjugating enzyme, putative ...    31   0.73 
At2g45480.1 68415.m05656 expressed protein                             29   2.2  
At3g01030.1 68416.m00004 zinc finger (C2H2 type) family protein ...    29   3.9  
At1g05830.1 68414.m00610 trithorax protein, putative / PHD finge...    29   3.9  
At2g33350.1 68415.m04088 hypothetical protein                          28   6.8  
At2g02310.1 68415.m00169 F-box family protein / SKP1 interacting...    28   6.8  
At1g80670.1 68414.m09466 transducin family protein / WD-40 repea...    27   8.9  

>At1g17280.1 68414.m02105 ubiquitin-conjugating enzyme, putative
           similar to ubiquitin conjugating enzyme 6 from [Homo
           sapiens] GI:14029267, [Mus musculus] GI:14029263;
           contains Pfam profile PF00179: Ubiquitin-conjugating
           enzyme
          Length = 237

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 18/70 (25%), Positives = 33/70 (47%)
 Frame = -3

Query: 645 KAFPVSPGQVGEQRLSQEGWDLLTTARAPPKET*QLKSNCFANESTTGSESRPAEKIRRE 466
           K FP    +  +Q+L+++    LTT  +P K   +++S    + +   SE    E+ +  
Sbjct: 151 KLFPEYVEKYNQQQLAEQATTQLTTPESPQKSDTKVESEKTIDPTKGDSEGGLKERKKNN 210

Query: 465 TQRADAWVRL 436
            Q   AW+ L
Sbjct: 211 KQGLPAWIIL 220


>At2g45480.1 68415.m05656 expressed protein
          Length = 429

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
 Frame = +3

Query: 30  YASVVFAHAARTHIDTLQSLQSRFCRLAVGAPW--------FVRNVDLHDDLGLESIRKY 185
           ++S + ++   THIDTL++  +R CR   G  W        F +  + H   G +  RK 
Sbjct: 70  HSSSLLSNKGVTHIDTLETEPTR-CRRTDGKKWRCSNTVLLFEKYCERHMHRGRKRSRKL 128

Query: 186 MKSASERYFDKAMRHDN 236
           ++S+SE     + ++DN
Sbjct: 129 VESSSE-VASSSTKYDN 144


>At3g01030.1 68416.m00004 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 353

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 162 GLESIRKYMKSASERYFDKAMRHDNRLIVAAADYSPNPDHAGAS 293
           GLE   K + S   ++ D  +R++ RL+  A D +P     G S
Sbjct: 175 GLEHFGKALGSTQRKFEDGLLRNEQRLVGEALDSNPEKKLVGIS 218


>At1g05830.1 68414.m00610 trithorax protein, putative / PHD finger
           family protein / SET domain-containing protein similar
           to trithorax-like protein 1 [Arabidopsis thaliana]
           GI:12659210; contains Pfam domain, PF00628: PHD-finger
           and PF00856: SET domain
          Length = 1056

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
 Frame = -3

Query: 621 QVGEQRLSQEGWD--LLTTARAPPKET*QLKSNCFANESTTGSESRP-----AEKIRRET 463
           ++G   L + G D   L+ +  PP    ++K+ C  N+    S S+       EK+   +
Sbjct: 142 RIGNGELMKLGVDSTTLSVSATPPLRGCRIKAVCSGNKQDGSSRSKRNTVKNQEKVVTAS 201

Query: 462 QRADAWVRLHFD 427
             A  WVRL +D
Sbjct: 202 ATAKKWVRLSYD 213


>At2g33350.1 68415.m04088 hypothetical protein
          Length = 440

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 168 ESIRKYMKSASERYFDKAMRHDNRLIVA 251
           E IR+YMK  +ER F+K +++  R  +A
Sbjct: 343 EKIRRYMKKRNERNFNKKIKYACRKTLA 370


>At2g02310.1 68415.m00169 F-box family protein / SKP1 interacting
           partner 3-related contains similarity to SKP1
           interacting partner 3 GI:10716951 from [Arabidopsis
           thaliana]
          Length = 307

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -3

Query: 528 CFANESTTGSESRPAEKIRRETQRADAWVRLHFDXFVEFDEYGYRG 391
           CF +EST  ++  P +K+ +  +R D W+      F  F++ G  G
Sbjct: 232 CF-DESTDKTKEWPKKKLMKSKKRGDGWMEAEIGDF--FNDGGLMG 274


>At1g80670.1 68414.m09466 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400) (1
           weak); similar to Hypothetical RAE1-like
           protein.(SP:Q38942) [Arabidopsis thaliana]; similar to
           mRNA-associated protein mrnp 41 ((mRNA export protein)
           (GB:AAC28126) (GI:1903456)(RAE1) (MRNP41) (SP:P78406)
           [Homo sapiens]
          Length = 349

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +1

Query: 379 AGLGTPVTVLVELDKXVEVQPNPC--ISPLSFSP 474
           A  G P T     +K  EV P+P   IS LSFSP
Sbjct: 2   ATFGAPATANSNPNKSYEVTPSPADSISSLSFSP 35


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,030,464
Number of Sequences: 28952
Number of extensions: 235485
Number of successful extensions: 593
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)