Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30093
         (555 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61530.2 68418.m07721 small G protein family protein / RhoGAP...    48   4e-06
At5g61530.1 68418.m07720 small G protein family protein / RhoGAP...    48   4e-06
At2g46710.1 68415.m05828 rac GTPase activating protein, putative...    33   0.17 
At3g48030.1 68416.m05236 hypoxia-responsive family protein / zin...    29   1.6  
At4g24580.1 68417.m03522 pleckstrin homology (PH) domain-contain...    29   2.8  
At4g15870.1 68417.m02412 terpene synthase/cyclase family protein       28   4.8  
At1g75340.1 68414.m08751 zinc finger (CCCH-type) family protein ...    27   6.4  
At4g34500.1 68417.m04904 protein kinase family protein contains ...    27   8.4  
At1g74190.1 68414.m08592 leucine-rich repeat family protein cont...    27   8.4  

>At5g61530.2 68418.m07721 small G protein family protein / RhoGAP
           family protein contains Pfam domain, PF00620: RhoGAP
           domain
          Length = 367

 Score = 48.0 bits (109), Expect = 4e-06
 Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
 Frame = +1

Query: 244 IFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLFT 423
           +FGV ++ +V+R        +PL++    DYL   GL S ++++ E D+   QQL   + 
Sbjct: 136 VFGVAIEITVQRQE--SSRPIPLILVKCADYLILTGLNSPNLFKAEGDRKLIQQLVSAYN 193

Query: 424 -DRGPTFPYHWDVPVACAMLKAFISELPESILTQELHRSVR 543
            D   + P   +     A+LK +++ LP  + T EL+  ++
Sbjct: 194 QDPRASIPEGVNPVDVAALLKYYLASLPTPLTTFELYNEIK 234


>At5g61530.1 68418.m07720 small G protein family protein / RhoGAP
           family protein contains Pfam domain, PF00620: RhoGAP
           domain
          Length = 376

 Score = 48.0 bits (109), Expect = 4e-06
 Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
 Frame = +1

Query: 244 IFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLFT 423
           +FGV ++ +V+R        +PL++    DYL   GL S ++++ E D+   QQL   + 
Sbjct: 136 VFGVAIEITVQRQE--SSRPIPLILVKCADYLILTGLNSPNLFKAEGDRKLIQQLVSAYN 193

Query: 424 -DRGPTFPYHWDVPVACAMLKAFISELPESILTQELHRSVR 543
            D   + P   +     A+LK +++ LP  + T EL+  ++
Sbjct: 194 QDPRASIPEGVNPVDVAALLKYYLASLPTPLTTFELYNEIK 234


>At2g46710.1 68415.m05828 rac GTPase activating protein, putative
           similar to rac GTPase activating protein 2 [Lotus
           japonicus] GI:3695061; contains Pfam profiles PF00620:
           RhoGAP domain, PF00786: P21-Rho-binding domain
          Length = 455

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
 Frame = +1

Query: 235 ALPIFGVPLQQSVERSRC-HDDTG--LPLVVRDSIDYLQAHG-LKSKDIYRTEPDKIKFQ 402
           ++ +FGV    S +  +C +DD G  +P ++      L   G LK++ I+R  PD  K +
Sbjct: 144 SVSVFGV----SAKSMQCSYDDRGNSVPTILLRMQKRLYTEGGLKAEGIFRINPDNGKEE 199

Query: 403 QLRKLFTDRGPTFPYHWDVPVACAMLKAFISELPESIL 516
            +R+         P   DV     ++KA+  ELP  +L
Sbjct: 200 HVRRQL--NCGVVPRGIDVHCLAGLIKAWFRELPTGVL 235


>At3g48030.1 68416.m05236 hypoxia-responsive family protein / zinc
           finger (C3HC4-type RING finger) family protein similar
           to RING-H2 finger protein RHX1a [Arabidopsis thaliana]
           GI:3790591; contains Pfam profiles PF00097: Zinc finger
           C3HC4 type (RING finger), PF04588: Hypoxia induced
           protein conserved region
          Length = 349

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 257 HCNSLWSALVAMTTPVCRWSSETASITYRHTD 352
           HC   W  L   T P+CR S  T+++ Y H++
Sbjct: 233 HCIDTW-LLSNSTCPLCRRSLSTSNVCYNHSE 263


>At4g24580.1 68417.m03522 pleckstrin homology (PH) domain-containing
           protein-related / RhoGAP domain-containing protein
           contains Pfam domain, PF00620: RhoGAP domain
          Length = 902

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 17/73 (23%), Positives = 31/73 (42%)
 Frame = +1

Query: 292 DDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLFTDRGPTFPYHWDVPVAC 471
           D  G P  +  ++ +++ HG++ + I R   D    +   + +      F    D  +  
Sbjct: 217 DVDGAPSFLEKALRFVENHGVRIEGILRQAADVDDVEHRIREYEKGKNEFSPEEDAHIIA 276

Query: 472 AMLKAFISELPES 510
             LK F+ ELP S
Sbjct: 277 DCLKYFLRELPSS 289


>At4g15870.1 68417.m02412 terpene synthase/cyclase family protein
          Length = 598

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 452 GTFLSLALCSKLLSVNSRNRY*HKSCTGQ 538
           G+ LSL L S L SV   + + HKS +GQ
Sbjct: 17  GSILSLPLRSNLFSVRKLSSFPHKSFSGQ 45


>At1g75340.1 68414.m08751 zinc finger (CCCH-type) family protein
           weak similarity to Nucleoporin NUP42 (Nuclear pore
           protein NUP42) (Swiss-Prot:P49686) [Saccharomyces
           cerevisiae]; contains Pfam profile  PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 435

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 181 PSTVTSGVPFEEIFTLGVALPIFGVPLQQSVERSR 285
           P  VT  + +EE+  +       G+PLQ  VER R
Sbjct: 138 PCDVTGDISYEELRAVAYEEAKRGIPLQSIVERER 172


>At4g34500.1 68417.m04904 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 437

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 415 LFTDRGPTFPYHWDVPVACAMLKA-FISELPESILTQELHRSVRTSH 552
           L  D GP  P  WD+ +  A+  A  ++ L E +  + +HR V++S+
Sbjct: 232 LHGDVGPVSPLTWDIRMKIAIGTAKGLAYLHEGLEPKVVHRDVKSSN 278


>At1g74190.1 68414.m08592 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Cf-2.1
           [Lycopersicon pimpinellifolium] gi|1184075|gb|AAC15779
          Length = 965

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 329 MLSRTTSGRPVSSWQRERSTDCC 261
           M+SRT S   + +W  + ++DCC
Sbjct: 42  MISRTESESVLPTWTNDTTSDCC 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,565,574
Number of Sequences: 28952
Number of extensions: 186954
Number of successful extensions: 560
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)