Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30025
         (309 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25660.1 68415.m03075 expressed protein                             28   1.1  
At3g16170.1 68416.m02041 acyl-activating enzyme 13 (AAE13) simil...    25   7.8  
At2g34980.1 68415.m04292 phosphatidylinositolglycan synthase fam...    25   7.8  

>At2g25660.1 68415.m03075 expressed protein 
          Length = 2146

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = -2

Query: 299 HVLLKTFKMKTIYFVLLISVCAV 231
           + L+KTFKMK ++F L  SV AV
Sbjct: 788 NALMKTFKMKPLFFPLAGSVTAV 810


>At3g16170.1 68416.m02041 acyl-activating enzyme 13 (AAE13) similar
           to malonyl CoA synthetase GB:AAF28840 from
           [Bradyrhizobium japonicum]; contains Pfam AMP-binding
           enzyme domain PF00501; identical to cDNA acyl-activating
           enzyme 13 (At3g16170) GI:29893232, acyl-activating
           enzyme 13 [Arabidopsis thaliana] GI:29893233
          Length = 544

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 263 YFVLLISVCAVSAIYLPDDSNSADLDKYKSESFGS 159
           Y  L  S   +S ++L DD+ +   +  K E FGS
Sbjct: 29  YGQLTSSALRISKLFLKDDTTNGGQETKKYEGFGS 63


>At2g34980.1 68415.m04292 phosphatidylinositolglycan synthase family
           protein similar to SP|Q92535 Phosphatidylinositol-glycan
           biosynthesis, class C protein (PIG-C) {Homo sapiens}
          Length = 303

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 241 SVRLAQYTCLTIRIQLIWISISQKVLGLN 155
           SV ++QY C+   + L+W+   +  L  N
Sbjct: 58  SVSISQYLCIVALVVLVWVHTLESSLDEN 86


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,273,494
Number of Sequences: 28952
Number of extensions: 38953
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 321405440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)