Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30015
         (525 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26190.1 68418.m03116 DC1 domain-containing protein contains ...    28   3.3  
At1g23140.1 68414.m02892 C2 domain-containing protein similar to...    28   4.4  

>At5g26190.1 68418.m03116 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 556

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 149 CFLCSRPSDRSGPGCVSTDRNVRSKCRCSNVSCSSHYDAQLTAFFI 12
           C  C RPS+    G      NV+   RC+ +S   ++D+ L + FI
Sbjct: 350 CVACQRPSN----GFRYESGNVKLDVRCATISDEFNHDSHLHSLFI 391


>At1g23140.1 68414.m02892 C2 domain-containing protein similar to
           zinc finger and C2 domain protein GI:9957238 from
           [Arabidopsis thaliana]
          Length = 165

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -2

Query: 143 LCSRPSDRSGPGCVSTDRNVRSKCRCSNVSCSSHYDAQLTAFFIDP 6
           L SR S+ S P  V T  + + K R    SC+  +D +LT    DP
Sbjct: 18  LVSRDSNTSDPFVVVTMGSQKLKTRGVENSCNPEWDDELTLGINDP 63


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,150,526
Number of Sequences: 28952
Number of extensions: 160755
Number of successful extensions: 409
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)