Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30003
         (712 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family...    29   2.3  
At5g02880.1 68418.m00231 HECT-domain-containing protein / ubiqui...    29   4.0  
At2g45290.1 68415.m05637 transketolase, putative strong similari...    27   9.3  

>At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965;
          Length = 185

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = +2

Query: 80  PSDRGHLHRRR*SYAA*APQDPHHDY*TSNVGAARPRG 193
           PS   H H RR + AA A Q PHH   T+  G     G
Sbjct: 107 PSPDNHRHHRRTTTAAVAGQPPHHRRTTAAAGTTTIAG 144


>At5g02880.1 68418.m00231 HECT-domain-containing protein /
           ubiquitin-transferase family protein /
           armadillo/beta-catenin-like repeat-containing protein
           similar to SP|Q14669 Thyroid receptor interacting
           protein 12 (TRIP12) {Homo sapiens}; contains Pfam
           profiles PF00632: HECT-domain (ubiquitin-transferase),
           PF00514: Armadillo/beta-catenin-like repeat
          Length = 1502

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 568 IEYYGTAEKCLTALKARCLTSPVAC 642
           IEY   AE+CL AL+      PVAC
Sbjct: 208 IEYLDVAEQCLQALEKISRDEPVAC 232


>At2g45290.1 68415.m05637 transketolase, putative strong similarity
           to transketolase 1 [Capsicum annuum] GI:3559814;
           contains Pfam profiles PF02779: Transketolase, pyridine
           binding domain, PF02780: Transketolase, C-terminal
           domain, PF00456: Transketolase, thiamine diphosphate
           binding domain
          Length = 741

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -1

Query: 580 RNTRFERGGIADHGTDQSCRGISILAVYFAIRLPGFVEVCA 458
           RN RF   G+ +HG    C GI       A+  PGF+  CA
Sbjct: 480 RNLRF---GVREHGMGAICNGI-------ALHSPGFIPYCA 510


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,882,756
Number of Sequences: 28952
Number of extensions: 287899
Number of successful extensions: 825
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)