Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00131X
         (431 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64050.1 68414.m07255 expressed protein                             27   7.2  
At5g48390.1 68418.m05983 tetratricopeptide repeat (TPR)-containi...    26   9.6  
At2g34830.1 68415.m04276 WRKY family transcription factor              26   9.6  

>At1g64050.1 68414.m07255 expressed protein
          Length = 668

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 159 RTTNGRKTLMVFKFRNTLSCRVHEAAVERL 70
           +T  G KT    KF NT+SC+  EA+V  L
Sbjct: 458 QTITGVKTSQT-KFANTISCQCAEASVSTL 486


>At5g48390.1 68418.m05983 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 900

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 297 QSVRNSCTLSHSAISALRTPASVCSSSCIL 208
           Q   +SC ++H AIS    P +V S S  L
Sbjct: 518 QKKEHSCAIAHEAISCQALPVAVASLSKFL 547


>At2g34830.1 68415.m04276 WRKY family transcription factor
          Length = 427

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -3

Query: 237 ASVCSSSCILVLRAEXSKSVLTFHCLRTTNG-RKTLMVFKFRNTLSC 100
           AS C+S  I V  A  + S      + TTN  R  L+V    NT SC
Sbjct: 125 ASTCNSPAITVSSAAVAASPWGMINVNTTNSPRNCLLVDNNNNTSSC 171


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,466,801
Number of Sequences: 28952
Number of extensions: 133982
Number of successful extensions: 300
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)