Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00117
         (827 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19750.1 68418.m02348 peroxisomal membrane 22 kDa family prot...    39   0.005
At1g52870.2 68414.m05978 peroxisomal membrane protein-related co...    38   0.006
At4g14310.1 68417.m02204 peroxisomal membrane protein-related co...    33   0.18 
At4g04470.1 68417.m00649 peroxisomal membrane protein 22 kDa (PM...    33   0.31 
At4g03410.2 68417.m00465 peroxisomal membrane protein-related co...    31   0.71 
At4g03410.1 68417.m00464 peroxisomal membrane protein-related co...    31   0.71 
At5g11220.1 68418.m01311 expressed protein                             29   3.8  
At2g14860.1 68415.m01689 peroxisomal membrane protein 22 kDa, pu...    29   5.0  
At4g27730.1 68417.m03985 oligopeptide transporter OPT family pro...    28   8.7  

>At5g19750.1 68418.m02348 peroxisomal membrane 22 kDa family protein
           similar to SP|P42925 22 kDa peroxisomal membrane protein
           {Mus musculus}; contains Pfam profile PF04117: Mpv17 /
           PMP22 family
          Length = 288

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +3

Query: 300 ANWKWLTLFQVINLAFIPPMLRVLFMNIVGFGWAMFLASKRRKQ 431
           ANW+    FQ +N  F+P   +VL  N+V   W + L+ K  K+
Sbjct: 241 ANWQLWIPFQFLNFRFVPQNYQVLASNVVALAWNVILSFKAHKE 284


>At1g52870.2 68414.m05978 peroxisomal membrane protein-related
           contains weak similarity to Swiss-Prot:Q07066 22 kDa
           peroxisomal membrane protein [Rattus norvegicus]
          Length = 366

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 19/68 (27%), Positives = 36/68 (52%)
 Frame = +3

Query: 264 KQLFALYLPVLEANWKWLTLFQVINLAFIPPMLRVLFMNIVGFGWAMFLASKRRKQSQRK 443
           K+L A +LP+L A WK      +I    +P   R+L+++ V   W   L++   ++S+ +
Sbjct: 286 KELKATFLPMLTAGWKLWPFAHLITYGLVPVEQRLLWVDCVELIWVTILSTYSNEKSEAR 345

Query: 444 GD*TLIST 467
              ++I T
Sbjct: 346 ISESVIET 353


>At4g14310.1 68417.m02204 peroxisomal membrane protein-related
            contains weak similarity to Peroxisomal membrane protein
            2 (22 kDa peroxisomal membrane protein)
            (Swiss-Prot:P42925) [Mus musculus]
          Length = 1087

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 306  WKWLTLFQVINLAFIPPMLRVLFMNIVGFGWAMFLASKRR 425
            WK+  +   +N  ++P   RVLF + V   W++FL  K R
Sbjct: 1041 WKFWPIVGWVNYQYVPLQFRVLFSSFVASCWSIFLNLKAR 1080



 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/33 (33%), Positives = 23/33 (69%)
 Frame = +1

Query: 100  HYFYETVERLFPEESASFPLAKKLLLERLIFAP 198
            H+F++ ++ +F  +  +  +AKK+LLE+L  +P
Sbjct: 971  HFFHKLMDTIFKGKKGNSTVAKKVLLEQLTSSP 1003


>At4g04470.1 68417.m00649 peroxisomal membrane protein 22 kDa
           (PMP22) identical to peroxisomal membrane protein
           [Arabidopsis thaliana] gi|3980254|emb|CAA06834
          Length = 190

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
 Frame = +3

Query: 162 KKVIIGTFDLCTINAXXXXXXXXXXXRKNS*AALKQLFALYLPVLEAN-WKWLTLFQVIN 338
           KKVI+    L  +N             +     +++      P ++   W +  +   IN
Sbjct: 92  KKVILEQLTLSPLNHLLFMIYYGVVIERTPWTLVRERIKKTYPTVQLTAWTFFPVVGWIN 151

Query: 339 LAFIPPMLRVLFMNIVGFGWAMFLASKRRKQS 434
             ++P   RV+  ++V F W +FL  + R  +
Sbjct: 152 YKYVPLHFRVILHSLVAFFWGIFLTLRARSMT 183



 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +1

Query: 100 HYFYETVERLFPEESASFPLAKKLLLERLIFAPL 201
           H+F+  +++ F  +  +  +AKK++LE+L  +PL
Sbjct: 71  HFFHTYLDKFFKGKKDTQTVAKKVILEQLTLSPL 104


>At4g03410.2 68417.m00465 peroxisomal membrane protein-related
           contains weak similarity to Swiss-Prot:P42925 22 kDa
           peroxisomal membrane protein [Mus musculus]
          Length = 361

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +3

Query: 282 YLPVLEANWKWLTLFQVINLAFIPPMLRVLFMNIVGFGWAMFLASKRRKQSQ 437
           +LP+L A WK   L  ++    IP   R+L+++ +   W   L++   ++++
Sbjct: 250 FLPMLTAGWKLWPLAHLVTYGVIPVDQRLLWVDCIELIWVTILSTYSNEKAE 301


>At4g03410.1 68417.m00464 peroxisomal membrane protein-related
           contains weak similarity to Swiss-Prot:P42925 22 kDa
           peroxisomal membrane protein [Mus musculus]
          Length = 317

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +3

Query: 282 YLPVLEANWKWLTLFQVINLAFIPPMLRVLFMNIVGFGWAMFLASKRRKQSQ 437
           +LP+L A WK   L  ++    IP   R+L+++ +   W   L++   ++++
Sbjct: 250 FLPMLTAGWKLWPLAHLVTYGVIPVDQRLLWVDCIELIWVTILSTYSNEKAE 301


>At5g11220.1 68418.m01311 expressed protein
          Length = 265

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 227 KEYRENACINGAKIKRSNNNFF-ASGND 147
           K Y EN C+ G  +K  N NF  A+GND
Sbjct: 190 KNYGEN-CVEGVYMKEDNKNFLNANGND 216


>At2g14860.1 68415.m01689 peroxisomal membrane protein 22 kDa,
           putative similar to 22 kDa peroxisomal membrane protein
           {Mus musculus} SWISS-PROT:P42925, NCBI_gi:454833
          Length = 252

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +1

Query: 100 HYFYETVERLFPEESASFPLAKKLLLERLIFAPLMQAFSLYSLARFEGK 246
           HY++  + RLFP++       KK+ + + I+ P+M        A  +G+
Sbjct: 136 HYWFNFMSRLFPKQDL-ITTFKKMAMGQTIYGPIMTVIFFSLNASLQGE 183


>At4g27730.1 68417.m03985 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe},
           oligopeptide transporter Opt1p [Candida albicans]
           GI:2367386; contains Pfam profile PF03169: OPT
           oligopeptide transporter protein
          Length = 736

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 315 LTLFQVINLAFIPPMLRVLFMNIVGFGWA 401
           + L+   +L F+P  L ++   I+GFGWA
Sbjct: 138 IKLYYKRSLPFLPAFLVMITTQILGFGWA 166


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,080,036
Number of Sequences: 28952
Number of extensions: 336791
Number of successful extensions: 753
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)