Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00112
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C su...    44   1e-04
At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR...    28   6.7  
At2g33255.1 68415.m04075 haloacid dehalogenase-like hydrolase fa...    28   6.7  
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    28   6.7  
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso...    27   8.8  
At1g78230.1 68414.m09116 leucine-rich repeat family protein            27   8.8  
At1g49450.1 68414.m05543 transducin family protein / WD-40 repea...    27   8.8  

>At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C
           subunit family protein similar to ATPase subunit 9
           [Arabidopsis thaliana] GI:15215920; contains Pfam
           profile PF00137: ATP synthase subunit C
          Length = 85

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 21/30 (70%), Positives = 23/30 (76%)
 Frame = +2

Query: 302 FGSLIIGYARNPSLKQQLFSYAILGFALSE 391
           F SLI   ARNPSL +Q F YAILGFAL+E
Sbjct: 39  FSSLIHSVARNPSLAKQSFGYAILGFALTE 68


>At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1095

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +1

Query: 37  LIKTKCCLPPD*SPLQPGLPSSATLH--WCDHLQQYPPI 147
           L++  CC   +  P    LPS   LH  +C  LQ +P I
Sbjct: 682 LLEMSCCKKLEIIPTNINLPSLEVLHFRYCTRLQTFPEI 720


>At2g33255.1 68415.m04075 haloacid dehalogenase-like hydrolase
           family protein contains InterPro accession IPR005834:
           Haloacid dehalogenase-like hydrolase
          Length = 224

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 477 ILHMRFQCILSEWTAMESNVWKPHPHSDARTDVCXTYSARQQE 605
           I H RF+ I S     E   +KP+P  D    +C T+  +  E
Sbjct: 119 IFHQRFEVIFSPALGREFRPYKPNP--DPLLHICSTWDIQPNE 159


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -2

Query: 241  NLAAESMSLVTDVVWKDRTAESCVGTAGTICVWVGTAASGRTS 113
            N+A+E + L+ ++         CV     +C+ VG ++SG+TS
Sbjct: 2028 NIASEQLKLLPEIRQNLEAVAHCVQNKW-LCILVGPSSSGKTS 2069


>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
           protein L5, rice
          Length = 301

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/81 (22%), Positives = 35/81 (43%)
 Frame = -2

Query: 541 FQTFDSMAVHSDSIH*NLICRMAVVVFLKVNSLESEEQQERHHKTEQTHSLRQGETQNGV 362
           F  +    V ++SI   +  ++   +  + N  ++E+   + HK      L   E +N +
Sbjct: 222 FSAYIKKGVEAESIE-EMYKKVHAAIRAEPNHKKTEKSAPKEHKRYNLKKLTYEERKNKL 280

Query: 361 *EQLLLEGGVPGIADDEGAED 299
            E++    G  G  DDE  E+
Sbjct: 281 IERVKALNGAGGDDDDEDDEE 301


>At1g78230.1 68414.m09116 leucine-rich repeat family protein
          Length = 676

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +1

Query: 199 RPHRSLRTLTLLPNSLVLVSDSGSS--WFRSWYWNSLRLPHHRLCQEPLP 342
           R HRS   + L  +S + +  SGS   W++ + W+   L  HR+  +  P
Sbjct: 255 RSHRSADRVMLKKHSSMQILPSGSRRLWWKLFLWSHRNLHKHRVSLKSQP 304


>At1g49450.1 68414.m05543 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           similar to En/Spm-like transposon protein GI:2739374
           from [Arabidopsis thaliana]; no characterized homologs
          Length = 471

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 523 MAVHSDSIH*NLICRMAVVVFLKVNSLESEEQQERHHKTEQTHS 392
           MA+  +  H + + RM    FLK  SL +EE  E +H     H+
Sbjct: 1   MAIEENRSHNDYLRRMTFAAFLKSGSLAAEE--ETYHSDGDHHN 42


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,373,712
Number of Sequences: 28952
Number of extensions: 338507
Number of successful extensions: 1154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)