Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00111
         (720 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso...   143   1e-34
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)             143   1e-34
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai...   143   1e-34
At4g10710.1 68417.m01751 transcriptional regulator-related simil...    31   0.77 
At1g29760.1 68414.m03639 expressed protein                             31   0.77 
At4g38880.1 68417.m05506 amidophosphoribosyltransferase, putativ...    29   2.3  
At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase, ...    29   3.1  
At1g14210.1 68414.m01682 ribonuclease T2 family protein contains...    28   5.4  
At5g63000.1 68418.m07904 expressed protein                             28   7.2  
At3g56260.1 68416.m06252 expressed protein                             28   7.2  
At4g08180.3 68417.m01353 oxysterol-binding family protein simila...    27   9.5  
At4g08180.2 68417.m01352 oxysterol-binding family protein simila...    27   9.5  
At4g08180.1 68417.m01351 oxysterol-binding family protein simila...    27   9.5  

>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
           protein S4, Arabidopsis thaliana, PIR:T48480
          Length = 262

 Score =  143 bits (346), Expect = 1e-34
 Identities = 64/84 (76%), Positives = 73/84 (86%)
 Frame = +2

Query: 2   RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 181
           RG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  EV+
Sbjct: 3   RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVI 62

Query: 182 KIVKQRLIKVDGKVRTDPTYPAGY 253
            I+ QR I+VDGKVRTD TYPAG+
Sbjct: 63  SILMQRHIQVDGKVRTDKTYPAGF 86



 Score =  123 bits (296), Expect = 1e-28
 Identities = 56/94 (59%), Positives = 69/94 (73%)
 Frame = +1

Query: 256 DVVSIEKTNELYRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 435
           DVVSI KTNE +RL+YD KGRF +H I  EEAK+KLCKV+ +  G K +PYL T+DGRTI
Sbjct: 88  DVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTI 147

Query: 436 RYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV 537
           RYPDPLIK ND+I+LD+   KI++      G  V
Sbjct: 148 RYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVV 181



 Score = 91.5 bits (217), Expect = 5e-19
 Identities = 39/61 (63%), Positives = 49/61 (80%)
 Frame = +3

Query: 510 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKAR 689
           IKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGK  
Sbjct: 173 IKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGT 232

Query: 690 R 692
           +
Sbjct: 233 K 233


>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
          Length = 262

 Score =  143 bits (346), Expect = 1e-34
 Identities = 64/84 (76%), Positives = 73/84 (86%)
 Frame = +2

Query: 2   RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 181
           RG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  EV+
Sbjct: 3   RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVI 62

Query: 182 KIVKQRLIKVDGKVRTDPTYPAGY 253
            I+ QR I+VDGKVRTD TYPAG+
Sbjct: 63  SILMQRHIQVDGKVRTDKTYPAGF 86



 Score =  122 bits (295), Expect = 2e-28
 Identities = 56/94 (59%), Positives = 69/94 (73%)
 Frame = +1

Query: 256 DVVSIEKTNELYRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 435
           DVVSI KTNE +RL+YD KGRF +H I  EEAK+KLCKV+ +  G K +PYL T+DGRTI
Sbjct: 88  DVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTI 147

Query: 436 RYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV 537
           RYPDPLIK ND+I+LD+   KI++      G  V
Sbjct: 148 RYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181



 Score = 91.5 bits (217), Expect = 5e-19
 Identities = 39/61 (63%), Positives = 49/61 (80%)
 Frame = +3

Query: 510 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKAR 689
           IKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGK  
Sbjct: 173 IKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGT 232

Query: 690 R 692
           +
Sbjct: 233 K 233


>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
           ribosomal protein S4 signature from residues 8 to 22
          Length = 261

 Score =  143 bits (346), Expect = 1e-34
 Identities = 64/84 (76%), Positives = 73/84 (86%)
 Frame = +2

Query: 2   RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 181
           RG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  EV+
Sbjct: 3   RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVI 62

Query: 182 KIVKQRLIKVDGKVRTDPTYPAGY 253
            I+ QR I+VDGKVRTD TYPAG+
Sbjct: 63  SILMQRHIQVDGKVRTDKTYPAGF 86



 Score =  122 bits (295), Expect = 2e-28
 Identities = 56/94 (59%), Positives = 69/94 (73%)
 Frame = +1

Query: 256 DVVSIEKTNELYRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 435
           DVVSI KTNE +RL+YD KGRF +H I  EEAK+KLCKV+ +  G K +PYL T+DGRTI
Sbjct: 88  DVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTI 147

Query: 436 RYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV 537
           RYPDPLIK ND+I+LD+   KI++      G  V
Sbjct: 148 RYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181



 Score = 91.5 bits (217), Expect = 5e-19
 Identities = 39/61 (63%), Positives = 49/61 (80%)
 Frame = +3

Query: 510 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKAR 689
           IKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGK  
Sbjct: 173 IKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGT 232

Query: 690 R 692
           +
Sbjct: 233 K 233


>At4g10710.1 68417.m01751 transcriptional regulator-related similar
           to chromatin-specific transcription elongation factor
           FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
          Length = 1074

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 120 KHSRNLWGPVDGLGAYTPPSLSNIHAL 40
           KHS +LWG  D L   TPP+  ++  L
Sbjct: 44  KHSADLWGSADALAIATPPASDDLRYL 70


>At1g29760.1 68414.m03639 expressed protein
          Length = 526

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 231 SVLTFPSTFMRRCFTIFRTSFPVKAYFRRFL 139
           S+LTFP   +R CF  F   F    + RRFL
Sbjct: 195 SLLTFPPWLLRNCFLFFFDPFSTIRFGRRFL 225


>At4g38880.1 68417.m05506 amidophosphoribosyltransferase, putative /
           glutamine phosphoribosylpyrophosphate amidotransferase,
           putative / phosphoribosyldiphosphate 5-amidotransferase,
           putative similar to amidophosphoribosyltransferase
           [Arabidopsis thaliana] GI:469195; contains Pfam profiles
           PF00156: Phosphoribosyl transferase domain, PF00310:
           Glutamine amidotransferases class-II
          Length = 532

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 28/91 (30%), Positives = 40/91 (43%)
 Frame = +3

Query: 396 ECSVLGNA*WPHHPLSRPTYQSQRFHPVRHCNYEDYGLIKFESGNLCMITGGRNLGRVGT 575
           EC V+G    P    SR +Y +   H ++H   E  G++      L  ITG   +  V T
Sbjct: 76  ECGVVGIHGDPE--ASRLSYLA--LHALQHRGQEGAGIVAANQNGLESITGVGLVSDVFT 131

Query: 576 IVSRERHPGSFDIVHIKDSTGHTFATRLNNV 668
                  PG   I H++ ST  + A+ L NV
Sbjct: 132 ESKLNNLPGDIAIGHVRYST--SGASMLKNV 160


>At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase,
           putative / steroid 5-alpha-reductase, putative identical
           to gi:1280611; contains a steroid 5-alpha reductase,
           C-terminal domain
          Length = 262

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 210 TFMRRCFTIFRTSFPVKAYFRRFLRKITRGKHSRNLWGP 94
           TF R C      + P  A   +FL+    GKH+R  WGP
Sbjct: 8   TFFRYCLLTLIFAGPPTAVLLKFLQA-PYGKHNRTGWGP 45


>At1g14210.1 68414.m01682 ribonuclease T2 family protein contains
           similarity to RNase GI:7768564 from [Nicotiana tabacum];
           contains Pfam profile PF00445: Ribonuclease T2 family
          Length = 247

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 493 TKIMDSSSLSPGTCV*SREAVTWGVWAPSCPARD 594
           T + D S +S   C   ++   WGVWA  CP+ +
Sbjct: 79  TNLFDISKISDLVCQMEKKWTEWGVWA--CPSNE 110


>At5g63000.1 68418.m07904 expressed protein
          Length = 201

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = -2

Query: 638 SRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPGLKLDESIIF 495
           +RGV DV NV GAG + A   G   P   A R    + G  L  ++ F
Sbjct: 110 TRGVHDVFNVVGAGSATAAVFGLIMPGSLAWRARNVLLGSVLGATVCF 157


>At3g56260.1 68416.m06252 expressed protein 
          Length = 176

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +3

Query: 426 PHHPLSRPTYQSQRFHPVRHCNYEDYGLIKFESGNLCMITGGRNLGRVGTI--VSRERHP 599
           P H L +     ++  P+ + NYE+  L    +  LC   GGR LG   ++  V+R    
Sbjct: 95  PPHSLKKRMSHDKK-SPLLYANYEEDELRSSPTSTLCCSNGGR-LGCSSSMGSVTRALFS 152

Query: 600 GSFDIVHIKDSTG 638
           GS + +   ++TG
Sbjct: 153 GSMEGMKRHETTG 165


>At4g08180.3 68417.m01353 oxysterol-binding family protein similar
           to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
           contains Pfam profiles PF00169: PH domain, PF01237:
           Oxysterol-binding protein
          Length = 813

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 143 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY 241
           N  ++A+T NE+   +K+RL   D ++R D  Y
Sbjct: 703 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRY 735


>At4g08180.2 68417.m01352 oxysterol-binding family protein similar
           to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
           contains Pfam profiles PF00169: PH domain, PF01237:
           Oxysterol-binding protein
          Length = 813

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 143 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY 241
           N  ++A+T NE+   +K+RL   D ++R D  Y
Sbjct: 703 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRY 735


>At4g08180.1 68417.m01351 oxysterol-binding family protein similar
           to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
           contains Pfam profiles PF00169: PH domain, PF01237:
           Oxysterol-binding protein
          Length = 814

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 143 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY 241
           N  ++A+T NE+   +K+RL   D ++R D  Y
Sbjct: 704 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRY 736


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,659,899
Number of Sequences: 28952
Number of extensions: 401023
Number of successful extensions: 1191
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)