Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00106
         (792 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g24170.1 68415.m02888 endomembrane protein 70, putative simil...    30   1.5  
At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50...    28   8.2  

>At2g24170.1 68415.m02888 endomembrane protein 70, putative similar
           to  MURA transposase of maize Mutator transposon
          Length = 637

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = -3

Query: 211 LVPVEVYYAQISNYEILCYYHDDLLAVEAAVVHQILFDCRSYSWLAFAFYVQGLSCFDIV 32
           ++ +   Y  ISNY  L  + + L      +VH  +F   +   L   +   G+ CF ++
Sbjct: 294 MIMLRTLYRDISNYNQLESHEEALEETGWKLVHGDVFRPPTNPELLCVYAGTGVQCFGMI 353

Query: 31  IFTLIF 14
           + T+IF
Sbjct: 354 LVTMIF 359


>At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50)
           identical to DNA repair-recombination protein GI:7110148
           from [Arabidopsis thaliana]
          Length = 1316

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 19/78 (24%), Positives = 37/78 (47%)
 Frame = +2

Query: 23  SKNNNIKTRKSLYVECKCKP*ITSAIKEDLVDHRSLNGKEVVVVITEDFVIRDLSIIDLN 202
           ++  N+K +    ++ +CK  I   +K  L   + +  + V  + + +    DLS+    
Sbjct: 546 TEQENLKKKHKKIID-ECKDRIRGVLKGRLPPEKDMKREIVQALRSIEREYDDLSLKSRE 604

Query: 203 RDKEVNGLVMRRQHHNRT 256
            +KEVN L M+ Q  N +
Sbjct: 605 AEKEVNMLQMKIQEVNNS 622


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,220,793
Number of Sequences: 28952
Number of extensions: 135342
Number of successful extensions: 330
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)