Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00103
         (782 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46790.2 68415.m05838 pseudo-response regulator 9 (APRR9) / t...    30   1.5  
At2g46790.1 68415.m05837 pseudo-response regulator 9 (APRR9) / t...    30   1.5  
At2g46670.1 68415.m05824 pseudo-response regulator, putative / t...    30   1.5  
At1g06490.1 68414.m00688 glycosyl transferase family 48 protein ...    29   4.6  
At3g61120.1 68416.m06840 MADS-box protein (AGL13)                      28   8.0  

>At2g46790.2 68415.m05838 pseudo-response regulator 9 (APRR9) /
           timing of CAB expression 1-like protein (TL1) identical
           to pseudo-response regulator 9 GI:10281000 from
           [Arabidopsis thaliana], timing of CAB expression 1-like
           protein [Arabidopsis thaliana] GI:9247022; contains Pfam
           profile PF00072: Response regulator receiver domain;
           identical to cDNA timing of CAB expression 1-like
           protein  GI:9247021
          Length = 351

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 505 SESRPTEKTRRETQWAVSME*FALCRNRRIRSSRCFQVNRTFSSRQK 365
           S  +P E+   + +W+ S    AL + R  R  RCF     + SR+K
Sbjct: 281 STEKPKEEESAKQRWSRSQREAALMKFRLKRKDRCFDKKVRYQSRKK 327


>At2g46790.1 68415.m05837 pseudo-response regulator 9 (APRR9) /
           timing of CAB expression 1-like protein (TL1) identical
           to pseudo-response regulator 9 GI:10281000 from
           [Arabidopsis thaliana], timing of CAB expression 1-like
           protein [Arabidopsis thaliana] GI:9247022; contains Pfam
           profile PF00072: Response regulator receiver domain;
           identical to cDNA timing of CAB expression 1-like
           protein  GI:9247021
          Length = 468

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 505 SESRPTEKTRRETQWAVSME*FALCRNRRIRSSRCFQVNRTFSSRQK 365
           S  +P E+   + +W+ S    AL + R  R  RCF     + SR+K
Sbjct: 398 STEKPKEEESAKQRWSRSQREAALMKFRLKRKDRCFDKKVRYQSRKK 444


>At2g46670.1 68415.m05824 pseudo-response regulator, putative /
           timing of CAB expression 1-like protein, putative
           similar to pseudo-response regulator 9 [Arabidopsis
           thaliana] GI:10281000, timing of CAB expression 1-like
           protein [Arabidopsis thaliana] GI:9247022
          Length = 183

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 505 SESRPTEKTRRETQWAVSME*FALCRNRRIRSSRCFQVNRTFSSRQK 365
           S  +P E+   + +W+ S    AL + R  R  RCF     + SR+K
Sbjct: 113 STEKPKEEESAKQRWSRSQREAALMKFRLKRKDRCFDKKVRYQSRKK 159


>At1g06490.1 68414.m00688 glycosyl transferase family 48 protein
            contains Pfam profile: PF02364 1,3-beta-glucan synthase
          Length = 1933

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 664  FKFIRRVSFYFF*VGTYFKFYVLLLNKAVCTY 759
            F F R +SFYF  VG YF   + +L   V  Y
Sbjct: 1487 FDFYRMLSFYFTTVGFYFSSMITVLTVYVFLY 1518


>At3g61120.1 68416.m06840 MADS-box protein (AGL13)
          Length = 244

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
 Frame = -3

Query: 513 TTDRNRDPLRRPGEKLSGLCPWNNSLFVV-----IEEFDRVGVFRLIGRFQVGKNNVID 352
           T  + +  L +   +LS LC    SL +      + EF  VGV R I R+   K+N++D
Sbjct: 20  TFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEFSNVGVGRTIERYYRCKDNLLD 78


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,372,021
Number of Sequences: 28952
Number of extensions: 258059
Number of successful extensions: 589
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)