Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00097
         (835 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35230.2 68415.m04322 VQ motif-containing protein contains PF...    33   0.23 
At2g35230.1 68415.m04321 VQ motif-containing protein contains PF...    33   0.23 
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro...    29   3.8  
At3g28850.1 68416.m03599 glutaredoxin family protein                   28   6.6  
At1g17520.1 68414.m02153 DNA-binding protein, putative contains ...    28   6.6  
At1g10390.1 68414.m01171 nucleoporin family protein contains Pfa...    28   8.8  

>At2g35230.2 68415.m04322 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 295

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -1

Query: 304 PPRGPSLGPAHPGLSYPC--ADFFDAPQSRWNE 212
           P +GP   P  PGL +P   + FF  P  RWN+
Sbjct: 262 PSQGPPQPPPSPGLMFPLSPSGFFPMPSPRWND 294


>At2g35230.1 68415.m04321 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 402

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -1

Query: 304 PPRGPSLGPAHPGLSYPC--ADFFDAPQSRWNE 212
           P +GP   P  PGL +P   + FF  P  RWN+
Sbjct: 369 PSQGPPQPPPSPGLMFPLSPSGFFPMPSPRWND 401


>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
           protein contains similarity to SP|Q02917 Early nodulin
           55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
           domain
          Length = 370

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = -3

Query: 434 AFATRNSLEFT*SSECPRVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSSP 270
           A    +S   T S      P+ S AH  P+    H P+HS   +PS + A   SP
Sbjct: 226 AHTPSHSPAHTPSHSPAHAPSHSPAHA-PSHSPAHAPSHSPAHSPSHSPATPKSP 279



 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -3

Query: 398 SSECPRVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSS 273
           +S  P  P+ S     P    +H P+HS   TPS + A T S
Sbjct: 200 TSHSPATPSPSPKSPSPV---SHSPSHSPAHTPSHSPAHTPS 238


>At3g28850.1 68416.m03599 glutaredoxin family protein 
          Length = 428

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
 Frame = -2

Query: 375 GCIKGAHWS----CRRGHAPPCTQRRWHPLADPRSDQLTRGSHIRALTSLTLPNLVGMNG 208
           GC    H      CRRG++PP   +R H +    S       H+ AL+S +L +L     
Sbjct: 2   GCASSKHRKRCLHCRRGYSPPVDVQRSHSV-HHASQNSEDSCHMVALSSSSLGSL----- 55

Query: 207 RLAQSAFIH 181
           +L  S+F H
Sbjct: 56  KLCDSSFGH 64


>At1g17520.1 68414.m02153 DNA-binding protein, putative contains
           similarity to DNA-binding protein PcMYB1 [Petroselinum
           crispum] gi|2224899|gb|AAB61699
          Length = 296

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 386 PRVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSS 273
           P++ AA+      A  A   P HSG  +P  TL R+ S
Sbjct: 72  PKIKAAAFHLAAAAAAAIVTPTHSGHSSPVATLPRSGS 109


>At1g10390.1 68414.m01171 nucleoporin family protein contains Pfam
           profiles: PF04096 nucleoporin autopeptidase, PF03093
           nucleoporin FG repeat family
          Length = 1041

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 362 AHTGPAGGATHRPAHSGGGTPSRTLARTSS 273
           A + PA GA+  PA  G  TPS   + TSS
Sbjct: 262 ASSTPAFGASSTPAFGGSSTPSFGASNTSS 291


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,410,392
Number of Sequences: 28952
Number of extensions: 397059
Number of successful extensions: 1005
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)