Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00095
         (798 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g09770.1 68414.m01096 myb family transcription factor contain...    69   4e-12
At5g52810.1 68418.m06554 ornithine cyclodeaminase/mu-crystallin ...    31   0.89 
At3g45530.1 68416.m04917 DC1 domain-containing protein contains ...    30   1.5  
At4g39952.1 68417.m05658 pentatricopeptide (PPR) repeat-containi...    29   3.6  
At2g43000.1 68415.m05336 no apical meristem (NAM) family protein...    28   6.2  

>At1g09770.1 68414.m01096 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 844

 Score = 68.9 bits (161), Expect = 4e-12
 Identities = 46/147 (31%), Positives = 74/147 (50%), Gaps = 3/147 (2%)
 Frame = +2

Query: 314 DRILMEAQNVMALTHVDTPLKGGLNTPLHESDFSGALPQNQVVATPNTVLATPFRSSRSE 493
           D I+MEA+N+  L    TPL GG N  LH SDF+G  P+ + + TPN +L TP  +    
Sbjct: 363 DAIMMEAENLARLRDSQTPLLGGENPELHPSDFTGVTPRKKEIQTPNPML-TPSMTPGGA 421

Query: 494 VSTP--GVLTLQDMAIVSLG*PQACEINLISTLKTE*MVVTLLKFPINFKNKPKTSVRNA 667
             TP  G+   +D +  S+  P+         +  +  +    K     + + + S+R+ 
Sbjct: 422 GLTPRIGLTPSRDGSSFSMT-PKGTPFRDELHINEDMDMHESAKLERQRREEARRSLRSG 480

Query: 668 LQSLPVPRNDYEIVV-PEQEAGEDKDD 745
           L  LP P+N+Y+IV  P  E  E+ ++
Sbjct: 481 LTGLPQPKNEYQIVAQPPPEESEEPEE 507



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 5/43 (11%)
 Frame = +3

Query: 78  DVPQAMLQGDA-----PARKRSKLVLPEPQVTDQELQQVVKLG 191
           D P A+LQ +        RKRSKL+LP PQ++D EL+++ K+G
Sbjct: 272 DAPAAILQANKLNDPEVVRKRSKLMLPPPQISDHELEEIAKMG 314


>At5g52810.1 68418.m06554 ornithine cyclodeaminase/mu-crystallin
           family protein contains Pfam PF02423: Ornithine
           cyclodeaminase/mu-crystallin family
          Length = 325

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 386 NTPLHESDFSGALPQNQVVATPNTVLATPFRSSRSEVSTPGV 511
           N P H S  +  + QN  V++P+++L  P  SS S +   GV
Sbjct: 29  NLPKHSSTITSPVRQNYTVSSPSSLLLMPSWSSSSSLPYMGV 70


>At3g45530.1 68416.m04917 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 692

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -2

Query: 431 FEVVPQ--KNHSHVMECSSLLSMGCPHELVP 345
           FEVVP+  ++ SHV  C  LL+ G P   VP
Sbjct: 51  FEVVPEIFEHPSHVGHCLKLLTTGAPDHTVP 81


>At4g39952.1 68417.m05658 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 726

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -2

Query: 425 VVPQKNHSHVMECSSLLSMGCPHELVPLHSVLPLEFCHV 309
           +VPQ    H   C+SLLSM C  EL+   SV    FC +
Sbjct: 346 LVPQGKAFHGTVCNSLLSMYCKFELL---SVAEKLFCRI 381


>At2g43000.1 68415.m05336 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
          Length = 275

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 591 QSEWW*HSSNFPSTSKTSQKHQSETLCNLC-LFREMT 698
           +++W  H    PST+KT    Q   +  LC +F+ +T
Sbjct: 133 KTDWMMHEFRLPSTTKTDSPAQQAEVWTLCRIFKRVT 169


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,202,616
Number of Sequences: 28952
Number of extensions: 329353
Number of successful extensions: 970
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)