Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00091
         (438 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20490.1 68415.m02392 nucleolar RNA-binding Nop10p family pro...    82   2e-16
At2g14455.1 68415.m01618 hypothetical protein                          26   9.7  

>At2g20490.1 68415.m02392 nucleolar RNA-binding Nop10p family
           protein similar to Nop10p (GI:8096260) [Homo sapiens]
          Length = 64

 Score = 81.8 bits (193), Expect = 2e-16
 Identities = 36/62 (58%), Positives = 46/62 (74%)
 Frame = +1

Query: 76  MYLRYYLNDKGDREYTLATIDPFGKPTLSAHPARFSPEDKYSRHRIIIKKRFGLLLTQQP 255
           MYL+ Y+N+KG++ YT     P G  T SAHPARFSP+DKYS+ R+++KKRFGLL TQ  
Sbjct: 1   MYLQCYINEKGEKVYTTKKESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNA 60

Query: 256 NL 261
            L
Sbjct: 61  PL 62


>At2g14455.1 68415.m01618 hypothetical protein
          Length = 260

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 248 NNRTYSLK*ILICIENYQNGLNFDTF*QLFSKSKAHRIYITYNRTQM 388
           NN+ + +  I++CI ++   +N D    +   +K HRI  T  R  +
Sbjct: 2   NNQNWVICVIVLCIWDHPPNVNGDVTTMILVDAKHHRIVATIPRLNL 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,349,312
Number of Sequences: 28952
Number of extensions: 164222
Number of successful extensions: 362
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)