Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00090X
         (351 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30590.1 68417.m04340 plastocyanin-like domain-containing pro...    29   0.66 
At3g48980.1 68416.m05350 expressed protein                             27   2.7  
At1g09300.1 68414.m01041 metallopeptidase M24 family protein sim...    27   3.5  

>At4g30590.1 68417.m04340 plastocyanin-like domain-containing
           protein
          Length = 190

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +3

Query: 174 DLPRVTPLAPVAASPPCACGRASVVARAVGRPDCXAPGW 290
           D P+V+P++P A +P  A G A+    AVG     A GW
Sbjct: 142 DAPKVSPVSPTAQTPAPAPGPAAAHNAAVGLK--VASGW 178


>At3g48980.1 68416.m05350 expressed protein
          Length = 539

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -3

Query: 334 RRLQPRESRTQWATRHPGAXQSGRPTARATTL 239
           + L+    RT+W  R P A   G PT   T L
Sbjct: 275 KELREGNQRTKWIDREPYAYWKGNPTVAETRL 306


>At1g09300.1 68414.m01041 metallopeptidase M24 family protein
           similar to SP|P15034 Xaa-Pro aminopeptidase (EC
           3.4.11.9) (X-Pro aminopeptidase) (Aminopeptidase P II)
           (Aminoacylproline aminopeptidase) {Escherichia coli};
           contains Pfam profiles PF00557: metallopeptidase family
           M24, PF05195: Aminopeptidase P, N-terminal domain
          Length = 493

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -3

Query: 334 RRLQPRESRTQWATRHPGAXQSGRPTARATTLARPHAQG-GDAATGAR 194
           R L  R SRTQ  +R+  + Q+ R   + T  + PH    G+   G R
Sbjct: 6   RNLVRRVSRTQVVSRNAYSTQTVRDIGQPTPASHPHLMAEGEVTPGIR 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,039,702
Number of Sequences: 28952
Number of extensions: 78525
Number of successful extensions: 235
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)