Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00087
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15690.2 68416.m01989 biotin carboxyl carrier protein of acet...    32   0.41 
At1g33020.1 68414.m04066 F-box family protein                          30   1.3  
At1g52670.1 68414.m05947 biotin/lipoyl attachment domain-contain...    30   1.7  
At4g34570.1 68417.m04912 bifunctional dihydrofolate reductase-th...    29   2.9  
At5g02180.1 68418.m00139 amino acid transporter family protein b...    29   3.9  
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel...    29   3.9  
At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-rel...    29   3.9  
At5g55220.1 68418.m06883 trigger factor type chaperone family pr...    27   8.9  
At1g01510.1 68414.m00067 C-terminal binding protein (ANGUSTIFOLI...    27   8.9  

>At3g15690.2 68416.m01989 biotin carboxyl carrier protein of
           acetyl-CoA carboxylase-related contains weak similarity
           to Biotin carboxyl carrier protein of acetyl-CoA
           carboxylase, chloroplast precursor (BCCP)
           (Swiss-Prot:Q42533) [Arabidopsis thaliana]
          Length = 263

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -3

Query: 193 SDVTGSVAVVHRHDGNPVGY---LLSLAVALTDERKL 92
           SDVTG V  + R DG PVGY   L+S+  +    +KL
Sbjct: 226 SDVTGEVVKILREDGEPVGYNDALISILPSFPGIKKL 262


>At1g33020.1 68414.m04066 F-box family protein
          Length = 548

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 579 PCETSRETTSRQTPEPWLSSSCAHLHRVDVVAARNQ 472
           P   S ET+SR+  + W+S S    H+V  +A R Q
Sbjct: 389 PKPPSTETSSREDHQGWISISSRKYHQVRTIAHRQQ 424


>At1g52670.1 68414.m05947 biotin/lipoyl attachment domain-containing
           protein similar to SP|Q06881 Biotin carboxyl carrier
           protein of acetyl-CoA carboxylase (BCCP) {Anabaena sp.};
           contains Pfam profile PF00364: Biotin-requiring enzyme
          Length = 274

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 193 SDVTGSVAVVHRHDGNPVGYLLSLAVAL 110
           SDV+G +  + R DG PVGY  +L   L
Sbjct: 237 SDVSGEIVKILREDGEPVGYNDALITVL 264


>At4g34570.1 68417.m04912 bifunctional dihydrofolate
           reductase-thymidylate synthase 2 / DHFR-TS (THY-2)
           identical to SP|Q05763
          Length = 565

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -1

Query: 663 IRSGSNLRRCPCGPSCHNLYANDMAFLMPCETSRETTSRQTPEPWLSS 520
           I  G  LR     PSC  ++  ++   + C+T   T      +PW SS
Sbjct: 178 IGGGDILREALNKPSCEAIHITEIDTSIDCDTFIPTVDTSAYQPWCSS 225


>At5g02180.1 68418.m00139 amino acid transporter family protein
           belongs to INTERPRO:IPR002422 amino acid/polyamine
           transporter, family II
          Length = 550

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 212 VTISTGPISKRCAAASPGLSTPP 280
           +T  TG + KRC  +SPG+ T P
Sbjct: 201 ITCYTGVLMKRCLESSPGIQTYP 223


>At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-related
            contains Pfam PF00400: WD domain, G-beta repeat; similar
            to BEIGE (GI:3928547) [Rattus norvegicus]; lysosomal
            trafficking regulator - Bos taurus, EMBL: AF114785
          Length = 3471

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +2

Query: 530  QGSGVCRDVVSRLVSQGIKNAMSFAYKLWHEGPQGHRRRLLPERIPTHT 676
            Q +GV  D   R+V  G ++ +   +++  +GP+G RR  L + +  HT
Sbjct: 3278 QCAGVSHD--GRIVVTGAEDGLVSVWRVSKDGPRGSRRLRLEKSLCAHT 3324


>At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-related
            similar to BEIGE (GI:3928547) [Rattus norvegicus];
            Similar to gb|U70015 lysosomal trafficking regulator from
            Mus musculus and contains 2 Pfam PF00400 WD-40, G-beta
            repeats. ESTs gb|T43386 and gb|AA395236 come from this
            gene
          Length = 3601

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +2

Query: 530  QGSGVCRDVVSRLVSQGIKNAMSFAYKLWHEGPQGHRRRLLPERIPTHT 676
            Q +GV  D   R+V  G ++ +   +++  +GP+G RR  L + +  HT
Sbjct: 3334 QCAGVSHD--GRIVVTGAEDGLVCVWRVSKDGPRGSRRLRLEKALCAHT 3380


>At5g55220.1 68418.m06883 trigger factor type chaperone family
           protein contains Pfam profiles PF05697: Bacterial
           trigger factor protein (TF), PF05698: Bacterial trigger
           factor protein (TF) C-terminus, PF00254: peptidyl-prolyl
           cis-trans isomerase, FKBP-type
          Length = 547

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 248 AAASPGLSTPPKDSSLPTDILKILTTFKISS 340
           AAASP + T  K+  LP D LK+  T + +S
Sbjct: 77  AAASPAVETSVKEDKLPAD-LKVTETVQANS 106


>At1g01510.1 68414.m00067 C-terminal binding protein (ANGUSTIFOLIA)
           nearly identical to C-terminal binding protein
           ANGUSTIFOLIA [Arabidopsis thaliana] GI:15408535;
           contains Pfam profile PF02826: D-isomer specific
           2-hydroxyacid dehydrogenase, NAD binding domain
          Length = 636

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +2

Query: 539 GVCRDVVSRLVSQGIKNAMSFAYK---LWHEGPQGHRRRLLPERIPTHTR 679
           G+   +V R VS     + S A+K   L+ + P+G   R+ P R P   R
Sbjct: 163 GMVLGIVGRSVSARYLASRSLAFKMSVLYFDVPEGDEERIRPSRFPRAAR 212


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,123,885
Number of Sequences: 28952
Number of extensions: 265955
Number of successful extensions: 836
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)