Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00084X
(535 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g04480.1 68416.m00475 endoribonuclease L-PSP family protein c... 30 1.1
At1g51960.1 68414.m05857 calmodulin-binding family protein conta... 28 4.5
At1g03055.2 68414.m00279 expressed protein 28 4.5
At1g03055.1 68414.m00278 expressed protein 28 4.5
At5g40820.1 68418.m04956 FAT domain-containing protein / phospha... 27 5.9
At5g25130.1 68418.m02977 cytochrome P450 family protein CYTOCHRO... 27 5.9
At1g77450.1 68414.m09019 no apical meristem (NAM) family protein... 27 5.9
At1g67500.1 68414.m07688 DNA polymerase family B protein similar... 27 5.9
At3g25420.1 68416.m03161 serine carboxypeptidase S10 family prot... 27 7.9
>At3g04480.1 68416.m00475 endoribonuclease L-PSP family protein
contains Pfam domain PF01902: Domain of unknown function
Length = 715
Score = 29.9 bits (64), Expect = 1.1
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Frame = +3
Query: 267 YS*EHWRPDCLQRRSIH-RVSVAWKTTSIERLGASKCGHNKI*IT--FYVYLKGQTHNTK 437
Y E W DC+Q+R + +V VA + S E + + ++ I F VYL +T +
Sbjct: 575 YKPEKWHQDCVQKRVVDGKVCVAVLSISAELMRKLQGEEEELEIVSRFCVYLLNKTLSEN 634
Query: 438 RASEEDSW*RKIPFS 482
S +D+ +I FS
Sbjct: 635 SFSWQDTTSLRIHFS 649
>At1g51960.1 68414.m05857 calmodulin-binding family protein contains
IQ calmodulin-binding motif, Pfam:PF00612
Length = 351
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -1
Query: 520 LCFGQEIWFFLVKEN-GIFLHHESSSDALFVL 428
LCF E W F +N LHH S+++ +V+
Sbjct: 238 LCFSDEKWKFATAQNTPRLLHHHSANNRYYVM 269
>At1g03055.2 68414.m00279 expressed protein
Length = 200
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 420 QTHNTKRASEEDSW*RKIPFSFTRKN 497
+T NTK AS EDS+ KI ++ KN
Sbjct: 56 ETSNTKNASIEDSFFSKIAINYLSKN 81
>At1g03055.1 68414.m00278 expressed protein
Length = 264
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 420 QTHNTKRASEEDSW*RKIPFSFTRKN 497
+T NTK AS EDS+ KI ++ KN
Sbjct: 56 ETSNTKNASIEDSFFSKIAINYLSKN 81
>At5g40820.1 68418.m04956 FAT domain-containing protein /
phosphatidylinositol 3- and 4-kinase family protein
similar to Atr protein [Xenopus laevis] GI:11385422;
contains Pfam profiles PF00454 Phosphatidylinositol 3-
and 4-kinase, PF02259 FAT domain, PF02260 FAT C domain
Length = 2702
Score = 27.5 bits (58), Expect = 5.9
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = -2
Query: 522 PCVSVRRFGFFW*RRMVFFFTTSPLLTPSSCCGSVL*DRHRT*SRSYYVRTLTLQV 355
P +S RR+ +W R++ F T S + ++C G V RH + +Y + L L V
Sbjct: 1479 PSMSFRRWLSYWIRKLTAFATGSRVSIFAACRGIV---RHDMQTATYLLPYLVLDV 1531
>At5g25130.1 68418.m02977 cytochrome P450 family protein CYTOCHROME
P450 71B1 - Thlaspi arvense, EMBL:L24438
Length = 496
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 62 LKKAKSDTEEVIPPQAEIIEADLYKRSY 145
LKKA+++ EVI + +IIE D+ + Y
Sbjct: 320 LKKAQAEVREVIKHKDDIIEEDIERLQY 347
>At1g77450.1 68414.m09019 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
similar to GRAB1 protein GB:CAA09371, a novel member of
the NAC domain family
Length = 253
Score = 27.5 bits (58), Expect = 5.9
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 503 DLVFSGEGEWYFSSPR 456
D+ GE EWYF SPR
Sbjct: 57 DMALYGEKEWYFFSPR 72
>At1g67500.1 68414.m07688 DNA polymerase family B protein similar to
SP|Q61493 DNA polymerase zeta catalytic subunit (EC
2.7.7.7) {Mus musculus}; contains Pfam profile PF00136:
DNA polymerase family B
Length = 1890
Score = 27.5 bits (58), Expect = 5.9
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 294 CLQRRSIHRVSVAWKTTSIER 356
CLQ +S ++ WKT+ +ER
Sbjct: 1806 CLQNKSAAAATIVWKTSKLER 1826
>At3g25420.1 68416.m03161 serine carboxypeptidase S10 family protein
similar to serine carboxypeptidase I precursor
(SP:P37890) from [Oryza sativa]
Length = 505
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -2
Query: 480 RMVFFFTTSPLLTPSSCCGSVL*DRHRT*SRSYYVRTLTLQVFQCWLFS 334
+ + F + S + C S L RH T S Y R LTL F+ +FS
Sbjct: 377 QFIIFLSISISIGNWELCSSNLEYRHDTGSMIEYHRNLTLSGFRALIFS 425
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,604,191
Number of Sequences: 28952
Number of extensions: 194585
Number of successful extensions: 435
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -