Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00080
         (317 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29120.1 68415.m03539 glutamate receptor family protein (GLR2...    27   2.1  
At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A)            27   3.6  
At1g20670.1 68414.m02589 DNA-binding bromodomain-containing prot...    27   3.6  
At3g55290.2 68416.m06141 short-chain dehydrogenase/reductase (SD...    26   4.8  
At3g55290.1 68416.m06140 short-chain dehydrogenase/reductase (SD...    26   4.8  
At1g29760.1 68414.m03639 expressed protein                             25   8.3  

>At2g29120.1 68415.m03539 glutamate receptor family protein (GLR2.7)
           plant glutamate receptor family, PMID:11379626
          Length = 926

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +1

Query: 103 GGAWPFLVGGAICLVNSGNERDSSLLNRRRYLGVRGLVSRNSLTK 237
           G  W  L  G + L+ S NER SSL N +  LGVR  + ++   K
Sbjct: 231 GYVW-LLTDGVMNLLKS-NERGSSLENMQGVLGVRSHIPKSKKLK 273


>At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A) 
          Length = 125

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -2

Query: 136 SLHQLRTAMHHHPPNQERAV 77
           S HQ RT  HHHP N    V
Sbjct: 19  SRHQRRTKSHHHPLNPPNPV 38


>At1g20670.1 68414.m02589 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 652

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 139 KSLHQLRTAMHHHPPNQERAVNLSILP 59
           K LH L +  H H PN +  +NL   P
Sbjct: 104 KLLHGLNSHSHRHSPNSQSDLNLDQTP 130


>At3g55290.2 68416.m06141 short-chain dehydrogenase/reductase (SDR)
           family protein contains similarity to
           3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
           from [Bacillus subtilis]
          Length = 279

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 115 PFLVGGAICLVNSGNERDSSLLNRRRYLGVRGLV 216
           P+LV   +C++    +R  S++N     G+RG++
Sbjct: 136 PWLVSKHVCMLMRDAKRGGSVINISSIAGIRGML 169


>At3g55290.1 68416.m06140 short-chain dehydrogenase/reductase (SDR)
           family protein contains similarity to
           3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
           from [Bacillus subtilis]
          Length = 280

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 115 PFLVGGAICLVNSGNERDSSLLNRRRYLGVRGLV 216
           P+LV   +C++    +R  S++N     G+RG++
Sbjct: 137 PWLVSKHVCMLMRDAKRGGSVINISSIAGIRGML 170


>At1g29760.1 68414.m03639 expressed protein
          Length = 526

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 139 CL-VNSGNERDSSLLNRRRYLGVRGLVSRNSLTKY*NSS*GTGVFE 273
           CL + S + + SSLL RR+    R L+S +  T+  +SS G  V E
Sbjct: 31  CLPIRSNSHQPSSLLRRRKSAHRRDLISSDIETEPSSSSDGFDVGE 76


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,269,696
Number of Sequences: 28952
Number of extensions: 113883
Number of successful extensions: 280
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 340508912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)