Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00077
(788 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g38140.1 68417.m05385 zinc finger (C3HC4-type RING finger) fa... 33 0.29
At5g19270.1 68418.m02295 hypothetical protein 31 0.87
At1g59660.1 68414.m06710 nucleoporin family protein contains Pfa... 29 4.6
At1g26260.2 68414.m03204 basic helix-loop-helix (bHLH) family pr... 29 4.6
At1g26260.1 68414.m03203 basic helix-loop-helix (bHLH) family pr... 29 4.6
At4g11440.1 68417.m01842 mitochondrial substrate carrier family ... 28 6.1
At2g36010.3 68415.m04422 E2F transcription factor-3 (E2F3) ident... 28 6.1
At2g36010.1 68415.m04420 E2F transcription factor-3 (E2F3) ident... 28 6.1
At5g05970.1 68418.m00661 transducin family protein / WD-40 repea... 28 8.1
>At4g38140.1 68417.m05385 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 145
Score = 32.7 bits (71), Expect = 0.29
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 364 SCKCVPYYLCNKNNEGVDVNNASVTGWGVLDVRFGEEDCQESVEICCTI 510
+C C+P KN D ++ G+ ++ V FG+++ +E EICC I
Sbjct: 20 TCVCIPLGRLKKNGGDADAHDDD--GYNLVGVMFGDKEKEE--EICCPI 64
>At5g19270.1 68418.m02295 hypothetical protein
Length = 365
Score = 31.1 bits (67), Expect = 0.87
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +2
Query: 440 GGECWMSGSAKKTAKRAWRSAALSHNGTRA-KAAAGPLEVEGMRLQEPHGGRSDHHRRVG 616
GG W+ + A+R AL N RA + GP V+ + EP GG + H +
Sbjct: 206 GGPVWLLNRLRSEAQRG---LALLRNRLRADEDEGGPDWVQDLLSSEPQGGPARFHNGLR 262
Query: 617 TEAQFG 634
E+Q G
Sbjct: 263 NESQGG 268
>At1g59660.1 68414.m06710 nucleoporin family protein contains Pfam
profiles: PF04096 nucleoporin autopeptidase, PF03093
nucleoporin FG repeat family
Length = 997
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = -2
Query: 274 GGRSEDVRSKAGSKVVSWARPTVTS--TASKSERIALLLLKHSEKENRQNFTSLYYENY 104
GG+S + GS+V+ +A T T+ T SKSER+ + + K +N L +E+Y
Sbjct: 325 GGQSTIGGQQGGSRVIPYAPTTDTASGTESKSERLQSISAMPAHK--GKNMEELRWEDY 381
>At1g26260.2 68414.m03204 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor GBOF-1
GI:5923912 from [Tulipa gesneriana]
Length = 390
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 560 GMRLQEPHGGRSDHHRRVGTEAQFGEFP 643
G++ QE HG SDHH V + G P
Sbjct: 350 GLKRQETHGYESDHHNLVHMNHETGTAP 377
>At1g26260.1 68414.m03203 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor GBOF-1
GI:5923912 from [Tulipa gesneriana]
Length = 390
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 560 GMRLQEPHGGRSDHHRRVGTEAQFGEFP 643
G++ QE HG SDHH V + G P
Sbjct: 350 GLKRQETHGYESDHHNLVHMNHETGTAP 377
>At4g11440.1 68417.m01842 mitochondrial substrate carrier family
protein
Length = 550
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +1
Query: 298 NLEDIIVKPTESNSVFTDKNGESCKCV 378
N E I+ P S +NG+ C CV
Sbjct: 184 NFEGCILNPVSSKEELASRNGDGCDCV 210
>At2g36010.3 68415.m04422 E2F transcription factor-3 (E2F3)
identical to E2F transcription factor-3 E2F3
[Arabidopsis thaliana] gi|10443853|gb|AAG17610
Length = 485
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 307 LPGSPCRLRRRGGRSEDVRSKAGSKVVSWARPTVTSTAS 191
+P SPC+ R+GGR +++SKA + P T+ S
Sbjct: 119 IPSSPCQTPRKGGR-VNIKSKAKGNKSTPQTPISTNAGS 156
>At2g36010.1 68415.m04420 E2F transcription factor-3 (E2F3)
identical to E2F transcription factor-3 E2F3
[Arabidopsis thaliana] gi|10443853|gb|AAG17610
Length = 483
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 307 LPGSPCRLRRRGGRSEDVRSKAGSKVVSWARPTVTSTAS 191
+P SPC+ R+GGR +++SKA + P T+ S
Sbjct: 119 IPSSPCQTPRKGGR-VNIKSKAKGNKSTPQTPISTNAGS 156
>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
family protein contains similarity to regulatory protein
Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
(6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
Length = 781
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -1
Query: 503 QQISTLSWQSSSPNLTSSTPHPVTLALLTST 411
+ +++LSWQ+S P + + + +ALL ST
Sbjct: 310 EDVTSLSWQTSKPVIVNEKNYTSEMALLGST 340
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,762,112
Number of Sequences: 28952
Number of extensions: 397169
Number of successful extensions: 1365
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1351
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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