Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00071
         (715 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15690.2 68416.m01989 biotin carboxyl carrier protein of acet...    32   0.43 
At5g58390.1 68418.m07312 peroxidase, putative similar to peroxid...    31   1.0  
At3g11060.1 68416.m01335 hypothetical protein                          30   1.8  
At1g52670.1 68414.m05947 biotin/lipoyl attachment domain-contain...    30   1.8  
At5g16800.2 68418.m01967 GCN5-related N-acetyltransferase (GNAT)...    29   4.0  
At5g16800.1 68418.m01968 GCN5-related N-acetyltransferase (GNAT)...    29   4.0  
At4g06479.1 68417.m00885 hypothetical protein                          28   5.3  
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ...    28   5.3  
At2g45910.1 68415.m05709 protein kinase family protein / U-box d...    28   7.1  

>At3g15690.2 68416.m01989 biotin carboxyl carrier protein of
           acetyl-CoA carboxylase-related contains weak similarity
           to Biotin carboxyl carrier protein of acetyl-CoA
           carboxylase, chloroplast precursor (BCCP)
           (Swiss-Prot:Q42533) [Arabidopsis thaliana]
          Length = 263

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -2

Query: 375 SDVTGSVAVVHRHDGNPVGY---LLSLAVALTDERKL 274
           SDVTG V  + R DG PVGY   L+S+  +    +KL
Sbjct: 226 SDVTGEVVKILREDGEPVGYNDALISILPSFPGIKKL 262


>At5g58390.1 68418.m07312 peroxidase, putative similar to peroxidase
           [Nicotiana tabacum] gi|5381253|dbj|BAA82306
          Length = 316

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -3

Query: 713 LVVVEGAHSLHRVDVVAARNQLYK*SLID--LASAKTILC*IPSGSSSLRAVRTRLHSIS 540
           +V + GAH++ R   V  RN++Y  S ID   A +K   C   SGS   +     + S  
Sbjct: 182 MVALSGAHTIGRAQCVTFRNRIYNASNIDTSFAISKRRNCPATSGSGDNKKANLDVRSPD 241

Query: 539 PF 534
            F
Sbjct: 242 RF 243


>At3g11060.1 68416.m01335 hypothetical protein
          Length = 213

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
 Frame = -3

Query: 674 DVVAARNQLYK*SLIDLASAKTIL-C*IPSGSSSLRAVRTRLHSISPFYQVTLEILMSSE 498
           DV+  R   Y  +L+ +      L   +PSG SS R +R    S + FY VT  IL    
Sbjct: 9   DVIVCRGLWYAMTLLSIFGLSISLNLLLPSGDSSSRFLRDGAVSATTFYAVT--ILRYLF 66

Query: 497 FSEYP*AT----TSPSEAL--TILATSAAHRLLIGPVLMVTVLTPPSLM*LEVSL 351
           F++ P       T+P + +   + +  A + + I P+    V T   L  L +SL
Sbjct: 67  FTDPPSTCYTEFTTPKKRIPQVVFSELALYLVFITPLACSLVFTENVLSLLYISL 121


>At1g52670.1 68414.m05947 biotin/lipoyl attachment domain-containing
           protein similar to SP|Q06881 Biotin carboxyl carrier
           protein of acetyl-CoA carboxylase (BCCP) {Anabaena sp.};
           contains Pfam profile PF00364: Biotin-requiring enzyme
          Length = 274

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 375 SDVTGSVAVVHRHDGNPVGYLLSLAVAL 292
           SDV+G +  + R DG PVGY  +L   L
Sbjct: 237 SDVSGEIVKILREDGEPVGYNDALITVL 264


>At5g16800.2 68418.m01967 GCN5-related N-acetyltransferase (GNAT)
           family protein very low similarity to SP|P39909
           Spermine/spermidine acetyltransferase (EC 2.3.1.57)
           {Bacillus subtilis}; contains Pfam profile PF00583:
           acetyltransferase, GNAT family
          Length = 270

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -2

Query: 546 YKPFLPSHARDFDVVR--IFRISVGNDESFGGVDNPGDVCSAPLTDRPRADGNS 391
           ++P  PS     + +   IF I     E F  V N GD+ S    DR R DG+S
Sbjct: 27  FRPINPSDLERLEQIHRDIFPIRY-ESEFFQNVVNGGDIVSWAAVDRSRPDGHS 79


>At5g16800.1 68418.m01968 GCN5-related N-acetyltransferase (GNAT)
           family protein very low similarity to SP|P39909
           Spermine/spermidine acetyltransferase (EC 2.3.1.57)
           {Bacillus subtilis}; contains Pfam profile PF00583:
           acetyltransferase, GNAT family
          Length = 236

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -2

Query: 546 YKPFLPSHARDFDVVR--IFRISVGNDESFGGVDNPGDVCSAPLTDRPRADGNS 391
           ++P  PS     + +   IF I     E F  V N GD+ S    DR R DG+S
Sbjct: 27  FRPINPSDLERLEQIHRDIFPIRY-ESEFFQNVVNGGDIVSWAAVDRSRPDGHS 79


>At4g06479.1 68417.m00885 hypothetical protein
          Length = 370

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 44  QVKTPSEEKWEAASEPDYHTNEDLLYPYSPIPYFGMY 154
           ++ TP++   E  S  D H  E+ LYP   IPY   Y
Sbjct: 289 KLATPAKRPCEICSHTD-HPTEECLYPPQTIPYTDDY 324


>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein ACBF GB:U90212 GI:1899187
           from [Nicotiana tabacum]
          Length = 445

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +2

Query: 101 TNEDLLYPYSPIPYFGMYHLVKIPIGRG 184
           T EDL+ P+S    FG    VKIP+G+G
Sbjct: 339 TEEDLMQPFSD---FGEVVSVKIPVGKG 363


>At2g45910.1 68415.m05709 protein kinase family protein / U-box
           domain-containing protein contains Pfam profiles PF00069
           Eukaryotic protein kinase domain,  PF04564: U-box
           domain; supported by tandem duplication of  (GI:3386604)
           (TIGR_Ath1:At2g45920) [Arabidopsis thaliana]
          Length = 834

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = -1

Query: 283 AQTVRSHCSSTKASYPVKFSHFSFSPVIDVVYQPSTNRYLHEVVHTEVGYWGVWI 119
           A+ +RSH  ++    P  F+ FSFS +     + +TN +   +   E GY  +++
Sbjct: 448 AEELRSHAETSTLQLPQYFTDFSFSEI-----EEATNHFDSTLKIGEGGYGSIYV 497


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,056,032
Number of Sequences: 28952
Number of extensions: 359686
Number of successful extensions: 1121
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)