Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00064
         (785 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03140.1 68415.m00267 CAAX amino terminal protease family pro...    31   0.87 
At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) simi...    29   3.5  
At5g09960.1 68418.m01151 expressed protein similar to unknown pr...    29   4.6  

>At2g03140.1 68415.m00267 CAAX amino terminal protease family protein
            very low similarity to SP|Q40863 Late embryogenesis
            abundant protein EMB8 from Picea glauca; contains Pfam
            profile PF02517 CAAX amino terminal protease family
            protein
          Length = 1805

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -1

Query: 407  KMHRDVRTTRL*FFTSYVYCEPWYVFARRSSTNNMRADSQGL*QG 273
            ++ RD++     F  + VY EP + F R S T+N+ A   G  +G
Sbjct: 1251 QLSRDIKKVAKTFSYAVVYSEPTWTFKRNSKTSNVPAGKVGKLRG 1295


>At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) similar
            to CREB-binding protein GB:AAC51770 GI:2443859 from [Homo
            sapiens]; contains Pfam PF02135: TAZ zinc finger profile;
            contains Pfam PF00569: Zinc finger, ZZ type domain;
            identical to histone acetyltransferase HAC4 (GI:14794966)
            {Arabidopsis thaliana}
          Length = 1456

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/41 (31%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +1

Query: 616  SSLDRVTGIRDAFLKISKTDNYPTLAPERPE-ISLTTSIDN 735
            +S+D+V  +++ FL++ + +NYP+  P + + I L   I+N
Sbjct: 909  ASVDKVLEVKERFLELFREENYPSEFPYKSKAIFLFQKIEN 949


>At5g09960.1 68418.m01151 expressed protein similar to unknown
           protein (emb|CAB61744.1)
          Length = 112

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 58  KNQQFFNPSNTHLKKSKNFAKKIMKCLNCVSK 153
           +NQ+ F+PS+ H   S +  + +  C NC  K
Sbjct: 80  ENQREFSPSHHHQPHSPSTRRSMFSCFNCCVK 111


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,166,973
Number of Sequences: 28952
Number of extensions: 330924
Number of successful extensions: 872
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)