Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00063
         (416 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g71830.1 68414.m08301 leucine-rich repeat family protein / pr...    29   1.7  
At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating]...    28   2.2  
At1g34210.1 68414.m04245 somatic embryogenesis receptor-like kin...    28   2.9  
At3g11380.1 68416.m01384 pentatricopeptide (PPR) repeat-containi...    27   6.7  
At2g16960.1 68415.m01954 importin beta-2 subunit family protein ...    27   6.7  
At5g07760.1 68418.m00888 formin homology 2 domain-containing pro...    26   8.9  
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ...    26   8.9  

>At1g71830.1 68414.m08301 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 625

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 157 GSNTSAANAIALGAMAVVAVGTFLFTWWKERK 252
           G   + A  +A GA  + A     F WW+ RK
Sbjct: 235 GITGAIAGGVAAGAALLFAAPAIAFAWWRRRK 266


>At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating],
           putative / glycine decarboxylase, putative / glycine
           cleavage system P-protein, putative strong similarity to
           SP|P49361 Glycine dehydrogenase [decarboxylating] A,
           mitochondrial precursor (EC 1.4.4.2) {Flaveria
           pringlei}; contains Pfam profile PF02347: Glycine
           cleavage system P-protein
          Length = 1037

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 282 SRLELRAVGDLPFFPPSKEKCSDRH 208
           ++L +  V +LPFF   K KCSD H
Sbjct: 443 NKLGVAEVQELPFFDTVKIKCSDAH 467


>At1g34210.1 68414.m04245 somatic embryogenesis receptor-like kinase
           2 (SERK2) nearly identical to somatic embryogenesis
           receptor-like kinase 2 [Arabidopsis thaliana]
           GI:14573457; contains Pfam domains PF00560: Leucine Rich
           Repeat and PF00069: Protein kinase domain; identical to
           cDNA somatic embryogenesis receptor-like kinase 2
           (SERK2) GI:14573456
          Length = 628

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 175 ANAIALGAMAVVAVGTFLFTWWKERK 252
           A  +A GA  + A     F WW+ RK
Sbjct: 244 AGGVAAGAALLFAAPALAFAWWRRRK 269


>At3g11380.1 68416.m01384 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 541

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 400 LMIYNIILLDSKHKRVHVSIILRTKL 323
           L + NI+L D KHK +   I+ R  +
Sbjct: 500 LSVVNILLCDMKHKNIEPDIVTRNNV 525


>At2g16960.1 68415.m01954 importin beta-2 subunit family protein
           contains weak hit to Pfam PF02985: HEAT repeat (4
           copies); contains weak hit to Pfam PF03130: PBS lyase
           HEAT-like repeat (2 copies); supported by tandem
           duplication of importin beta family protein
           (TIGR_Ath1:At2g16950) [Arabidopsis thaliana]; similar to
           Importin beta-2 subunit (Karyopherin beta-2 subunit)
           (Transportin) (M9 region interaction protein) (MIP)
           (Swiss-Prot:Q92973) [Homo sapiens]
          Length = 547

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +1

Query: 121 CHFAMTKNSNSQGSNTSAAN--AIALGAMAV 207
           CH  +TK++N  G N SAAN    A+G +AV
Sbjct: 336 CH--LTKSANFSGENLSAANNACKAIGELAV 364


>At5g07760.1 68418.m00888 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 853

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 292 LRRFAP*APCGGGPSFLSTK*REMFRPPQPPSRLVL*H*QRMCCC 158
           +RR AP  P    P   + + R + RPP PP  L +   + +CCC
Sbjct: 48  MRRRAPLPP----PPPPAMRRRVLPRPPPPPPPLPMFDAEVLCCC 88


>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
           RNA recognition motif (RRM)-containing protein contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM), PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 540

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 37  KLVLSRFQSVPCKVFHHNHCRFSLPQINCHFAMTKNSNSQGSNTS-AANAIALG 195
           ++ L R  SVP ++ HH   R SLP  +     TK  N Q ++   AA A+ +G
Sbjct: 185 RIELLRSNSVPPRLAHHFMTRSSLPSFS-----TKGVNLQQNDVQRAAAALMIG 233


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,926,726
Number of Sequences: 28952
Number of extensions: 169825
Number of successful extensions: 480
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)