Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00062
         (782 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16800.2 68418.m01967 GCN5-related N-acetyltransferase (GNAT)...    33   0.28 
At5g16800.1 68418.m01968 GCN5-related N-acetyltransferase (GNAT)...    33   0.28 
At3g15690.2 68416.m01989 biotin carboxyl carrier protein of acet...    31   0.65 
At1g52670.1 68414.m05947 biotin/lipoyl attachment domain-contain...    30   2.0  
At5g11530.1 68418.m01345 embryonic flower 1 (EMF1) identical to ...    29   4.6  
At4g32920.1 68417.m04685 glycine-rich protein                          28   6.1  
At4g11450.1 68417.m01843 expressed protein                             28   6.1  
At4g06479.1 68417.m00885 hypothetical protein                          28   6.1  
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s...    28   8.0  

>At5g16800.2 68418.m01967 GCN5-related N-acetyltransferase (GNAT)
           family protein very low similarity to SP|P39909
           Spermine/spermidine acetyltransferase (EC 2.3.1.57)
           {Bacillus subtilis}; contains Pfam profile PF00583:
           acetyltransferase, GNAT family
          Length = 270

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -3

Query: 525 YKPFLPAHARDFE-CHQNFQNIRRQRRVFGGVDNPGDVCSAPLTDRPRADGNS 370
           ++P  P+     E  H++   IR +   F  V N GD+ S    DR R DG+S
Sbjct: 27  FRPINPSDLERLEQIHRDIFPIRYESEFFQNVVNGGDIVSWAAVDRSRPDGHS 79


>At5g16800.1 68418.m01968 GCN5-related N-acetyltransferase (GNAT)
           family protein very low similarity to SP|P39909
           Spermine/spermidine acetyltransferase (EC 2.3.1.57)
           {Bacillus subtilis}; contains Pfam profile PF00583:
           acetyltransferase, GNAT family
          Length = 236

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -3

Query: 525 YKPFLPAHARDFE-CHQNFQNIRRQRRVFGGVDNPGDVCSAPLTDRPRADGNS 370
           ++P  P+     E  H++   IR +   F  V N GD+ S    DR R DG+S
Sbjct: 27  FRPINPSDLERLEQIHRDIFPIRYESEFFQNVVNGGDIVSWAAVDRSRPDGHS 79


>At3g15690.2 68416.m01989 biotin carboxyl carrier protein of
           acetyl-CoA carboxylase-related contains weak similarity
           to Biotin carboxyl carrier protein of acetyl-CoA
           carboxylase, chloroplast precursor (BCCP)
           (Swiss-Prot:Q42533) [Arabidopsis thaliana]
          Length = 263

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = -3

Query: 354 SDVTGSVAVVHRHDGNPVGY 295
           SDVTG V  + R DG PVGY
Sbjct: 226 SDVTGEVVKILREDGEPVGY 245


>At1g52670.1 68414.m05947 biotin/lipoyl attachment domain-containing
           protein similar to SP|Q06881 Biotin carboxyl carrier
           protein of acetyl-CoA carboxylase (BCCP) {Anabaena sp.};
           contains Pfam profile PF00364: Biotin-requiring enzyme
          Length = 274

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 354 SDVTGSVAVVHRHDGNPVGYLLSLAVAL 271
           SDV+G +  + R DG PVGY  +L   L
Sbjct: 237 SDVSGEIVKILREDGEPVGYNDALITVL 264


>At5g11530.1 68418.m01345 embryonic flower 1 (EMF1) identical to
           embryonic flower 1 [Arabidopsis thaliana] GI:15430697
          Length = 1096

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 781 LVPQFVPNDMAFLMPCETSRETTSRQTPDPGCRRA-AHSL 665
           +V +FVP+     +PCETS+E       DP  R   AHSL
Sbjct: 355 VVDEFVPS-----LPCETSQEGIKEHDADPSKRSTPAHSL 389


>At4g32920.1 68417.m04685 glycine-rich protein 
          Length = 1432

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/61 (21%), Positives = 29/61 (47%)
 Frame = -2

Query: 250  VHIVAPTKASYPVKVSHFSXSPVIDVVYQXSTNRYLHEVVHTEVGYWGVWIQQVLICVVV 71
            ++ + P   S P  +SH     + ++VY+ + N ++ EV       W      +++ V+V
Sbjct: 948  IYFLGPNTFSEPWHLSHTPPEEIKEIVYEAAFNGFVDEVNVIAAYQWWEGAIYIMLSVLV 1007

Query: 70   W 68
            +
Sbjct: 1008 Y 1008


>At4g11450.1 68417.m01843 expressed protein 
          Length = 694

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -1

Query: 275 PLLTSANVRSHCSSDESLLPCQG*SLFLXPSNRRGVPALYQSVSSRG 135
           PL+   N R  CS D+ L+  Q          +  +PALY S    G
Sbjct: 554 PLMVLGNPRISCSHDQPLVENQHPLQLFVQGAKEHIPALYMSFVEEG 600


>At4g06479.1 68417.m00885 hypothetical protein
          Length = 370

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 23  QVKTPSEEKWEAASEPDYHTNEDLLYPYSPIPYFGMY 133
           ++ TP++   E  S  D H  E+ LYP   IPY   Y
Sbjct: 289 KLATPAKRPCEICSHTD-HPTEECLYPPQTIPYTDDY 324


>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
           similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
           [Drosophila melanogaster]
          Length = 926

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 540 TNCPQT*RPRRNSAQKWSLPTQGQSTITCTT 632
           TNCP      RNS    + P   +ST++C T
Sbjct: 778 TNCPSRVPASRNSRPTATNPRNDESTVSCNT 808


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,961,713
Number of Sequences: 28952
Number of extensions: 353758
Number of successful extensions: 1072
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)