Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00061
         (775 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26580.1 68417.m03832 zinc finger (C3HC4-type RING finger) fa...    29   3.4  
At5g06680.1 68418.m00754 tubulin family protein similar to SP|Q9...    28   6.0  
At2g28310.2 68415.m03438 expressed protein contains Pfam profile...    28   7.9  
At2g28310.1 68415.m03437 expressed protein contains Pfam profile...    28   7.9  
At1g03440.1 68414.m00324 leucine-rich repeat family protein cont...    28   7.9  

>At4g26580.1 68417.m03832 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 464

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 285 FLRFFLVLFTVPLIHVFCQYEMQVRSNRRPASN 187
           FL F L+   VPL+  F  Y M V S+ + AS+
Sbjct: 357 FLLFLLLCCVVPLVSSFLGYNMNVGSSEKGASD 389


>At5g06680.1 68418.m00754 tubulin family protein similar to
           SP|Q96CW5 Gamma-tubulin complex component 3 {Homo
           sapiens}
          Length = 838

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 23/95 (24%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
 Frame = +1

Query: 490 WRYCNIKLDELNLWKIDGKALL--QKFIPMESNGRV-----LHKCTCVYSGWN--VDNRD 642
           W+   ++   + +WK      +    F+ ++S+ ++     L +C  +++  N  V N  
Sbjct: 610 WKLKRVEHALIGIWKTMKPNCITSNSFVKLQSSVKLQLLSALRRCQVLWNEMNHFVTNFQ 669

Query: 643 NYYPITEILDRNPRTDSKEICVALDLNDLIKVRDK 747
            YY + E+L+ +    SKE+  A DL+DL+   +K
Sbjct: 670 -YYIMFEVLEVSWSNFSKEMEAAKDLDDLLAAHEK 703


>At2g28310.2 68415.m03438 expressed protein contains Pfam profile
           PF05212: Protein of unknown function (DUF707)
          Length = 374

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -2

Query: 546 FAINFPQVQFIKFDITVSPSHFTSDFSKTKFPE 448
           F IN P       D+ +S      DF   KFPE
Sbjct: 42  FKINLPSRLISSLDVAISGDKSPEDFGSRKFPE 74


>At2g28310.1 68415.m03437 expressed protein contains Pfam profile
           PF05212: Protein of unknown function (DUF707)
          Length = 374

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -2

Query: 546 FAINFPQVQFIKFDITVSPSHFTSDFSKTKFPE 448
           F IN P       D+ +S      DF   KFPE
Sbjct: 42  FKINLPSRLISSLDVAISGDKSPEDFGSRKFPE 74


>At1g03440.1 68414.m00324 leucine-rich repeat family protein
           contains leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611
          Length = 397

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
 Frame = -3

Query: 740 LTLIRSFKSNATHISLESVRGLRS---SISVMG**LSRLSTFHPEYTHVHLCKTLPFDSI 570
           L + R+F S     SL  VRGLR+   S + +   +S      PE +++ LC      SI
Sbjct: 128 LAISRNFISGEIPASLGEVRGLRTLDLSYNQLTGTISPSIGSLPELSNLILCHNHLTGSI 187

Query: 569 GINFCNNALPSIFHKFSS--SSLILQYLHPILHLISARQNFLNGNALVHLSIDLNQI 405
              F +  L  I  K +S   S+    L P L  +S   N L G ++ H+ + LNQ+
Sbjct: 188 P-PFLSQTLTRIDLKRNSLTGSISPASLPPSLQYLSLAWNQLTG-SVYHVLLRLNQL 242


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,752,107
Number of Sequences: 28952
Number of extensions: 317102
Number of successful extensions: 968
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)