Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00058
         (753 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16640.1 68416.m02127 translationally controlled tumor family...    62   4e-10
At3g05540.1 68416.m00607 translationally controlled tumor family...    51   9e-07
At4g29060.1 68417.m04157 elongation factor Ts family protein sim...    34   0.088
At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR...    31   0.82 
At1g63910.1 68414.m07236 myb family transcription factor (MYB103...    28   5.8  
At3g59660.1 68416.m06656 C2 domain-containing protein / GRAM dom...    28   7.7  

>At3g16640.1 68416.m02127 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 168

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 3/72 (4%)
 Frame = +2

Query: 41  MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEG 211
           M +Y+D++TGDE+ SD++  K ++  +++EV G+ VT    D+ I G NPSAEE   DEG
Sbjct: 1   MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVTVGAVDVNI-GANPSAEEGGEDEG 59

Query: 212 TDSAVESGVDIV 247
            D + +  VDIV
Sbjct: 60  VDDSTQKVVDIV 71



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 27/70 (38%), Positives = 37/70 (52%)
 Frame = +1

Query: 283 DKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCD 462
           DKK +  Y+K Y+K L  KL E+  DQ  VFK  +    K +L R  + QFF GE M  D
Sbjct: 83  DKKGFIAYIKKYIKLLTPKLSEE--DQA-VFKKGIEGATKFLLPRLSDFQFFVGEGMHDD 139

Query: 463 GMVAMMEYRD 492
             +    Y++
Sbjct: 140 STLVFAYYKE 149


>At3g05540.1 68416.m00607 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 156

 Score = 50.8 bits (116), Expect = 9e-07
 Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
 Frame = +1

Query: 283 DKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDC- 459
           DKK + +++K Y+K+L  KL+    +  E+FK ++    K ++ + K+ QFF GESM+  
Sbjct: 70  DKKQFVMFMKRYIKQLSPKLDS---ENQELFKKHIESATKFLMSKLKDFQFFVGESMEGE 126

Query: 460 DGMVAMMEYRD 492
           +G +    YR+
Sbjct: 127 EGSLVFAYYRE 137



 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
 Frame = +2

Query: 41  MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEGT 214
           M +Y+DI+TGDE+ SD++  K ++       G L        ++EG NPS EE   DEG 
Sbjct: 1   MLVYQDILTGDELLSDSFPYKEIE------NGML-------WEVEGKNPSGEEGGEDEGV 47

Query: 215 DSAVESGVDIV 247
           D      VDI+
Sbjct: 48  DDQAVKVVDII 58


>At4g29060.1 68417.m04157 elongation factor Ts family protein
           similar to SP|P35019 Elongation factor Ts (EF-Ts)
           {Galdieria sulphuraria}; contains Pfam profiles PF00627:
           UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
           S1 RNA binding domain
          Length = 953

 Score = 34.3 bits (75), Expect = 0.088
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = +2

Query: 68  GDEMFSDTYKMKLVDEVIYEVT--GRLVTRAQGDIQIEGFNPSAEEADEGTDSAVESG 235
           G+   S   K +++D V+  +T  G  +T  +G+   EGF P+AEEAD+G  S +  G
Sbjct: 238 GEGFNSKFAKGQMLDGVVKNLTRSGAFITIGEGE---EGFLPTAEEADDGIGSMMMGG 292


>At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1355

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 313 DYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ-FFTGESMD 456
           D M+  + KL    P  +EVFK+N N + ++    F ++  FF GE  D
Sbjct: 226 DKMEVKLLKLNHPPPQIMEVFKSNYNALNENEKSMFLDIACFFRGEKAD 274


>At1g63910.1 68414.m07236 myb family transcription factor (MYB103)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 370

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -3

Query: 151 SRHQPTGHFVNNFIDQFHFVSVREHLITSDNVLIDLHFDGLEAIKNNKN 5
           SRHQP+   V    D     +  E   T+ + + +LHFDG     N  N
Sbjct: 124 SRHQPSVTTVTLNADTTSIATTIEASTTTTSTIDNLHFDGFTDSPNQLN 172


>At3g59660.1 68416.m06656 C2 domain-containing protein / GRAM
           domain-containing protein low similarity to GLUT4
           vesicle protein [Rattus norvegicus] GI:4193489; contains
           Pfam profiles PF00168: C2 domain, PF02893: GRAM domain
          Length = 594

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 508 FAYHQSLYIPSWQPC-HHNPWTPQ*RTEVP 422
           F YH  +Y+ +W  C H N ++ Q +  VP
Sbjct: 255 FLYHGRMYVSAWHICFHSNVFSKQMKVVVP 284


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,892,381
Number of Sequences: 28952
Number of extensions: 291003
Number of successful extensions: 800
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)