Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00057
(445 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C) cont... 69 2e-12
At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S ... 69 2e-12
At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B) cont... 68 3e-12
At3g09850.1 68416.m01175 D111/G-patch domain-containing protein ... 29 1.1
At2g46910.1 68415.m05858 plastid-lipid associated protein PAP / ... 29 1.9
At4g33850.1 68417.m04803 glycosyl hydrolase family 10 protein si... 28 2.5
At3g10770.2 68416.m01297 expressed protein 27 5.7
At3g10770.1 68416.m01296 expressed protein 27 5.7
>At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C)
contains similarity to 40S ribosomal protein S10
Length = 179
Score = 68.5 bits (160), Expect = 2e-12
Identities = 28/47 (59%), Positives = 39/47 (82%)
Frame = +2
Query: 65 SPEVMSKTQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 205
S E + +T FAW H+YW+LTNEGIE+LR +L+LP ++VPATLK+S +
Sbjct: 51 SKEYVRET-FAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAK 96
Score = 37.1 bits (82), Expect = 0.005
Identities = 17/29 (58%), Positives = 23/29 (79%)
Frame = +1
Query: 4 KHTELEKIPNLQVIKAMQSLKSRGYVKDT 90
KH ++ +PNLQVIK MQS KS+ YV++T
Sbjct: 31 KHPLID-VPNLQVIKLMQSFKSKEYVRET 58
>At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S
ribosomal protein S10 - Lumbricus rubellus, PID:e1329701
Length = 177
Score = 68.5 bits (160), Expect = 2e-12
Identities = 28/47 (59%), Positives = 39/47 (82%)
Frame = +2
Query: 65 SPEVMSKTQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 205
S E + +T FAW H+YW+LTNEGIE+LR +L+LP ++VPATLK+S +
Sbjct: 51 SKEYVRET-FAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAK 96
Score = 39.9 bits (89), Expect = 8e-04
Identities = 18/30 (60%), Positives = 24/30 (80%)
Frame = +1
Query: 1 PKHTELEKIPNLQVIKAMQSLKSRGYVKDT 90
PKH ++ +PNLQVIK MQS KS+ YV++T
Sbjct: 30 PKHPLID-VPNLQVIKLMQSFKSKEYVRET 58
>At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B)
contains similarity to 40S ribosomal protein S10
Length = 180
Score = 67.7 bits (158), Expect = 3e-12
Identities = 32/59 (54%), Positives = 44/59 (74%)
Frame = +2
Query: 65 SPEVMSKTQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGRP 241
S E + +T FAW H+YW+LTNEGI++LR +L+LP EIVPATLK+ ++ P+GRP
Sbjct: 52 SKEYVRET-FAWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKK-------QQKPLGRP 102
Score = 44.0 bits (99), Expect = 5e-05
Identities = 18/30 (60%), Positives = 24/30 (80%)
Frame = +1
Query: 1 PKHTELEKIPNLQVIKAMQSLKSRGYVKDT 90
P+H +E +PNLQVIK MQS KS+ YV++T
Sbjct: 30 PQHPLIESVPNLQVIKLMQSFKSKEYVRET 59
>At3g09850.1 68416.m01175 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain
Length = 781
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -2
Query: 261 SRGAGASGRPTGPRRTVSVRTERLSVAGTISGGR 160
S G G+SG+ S RT S AG+ SGGR
Sbjct: 9 SNGGGSSGKNKAKSPGQSTRTNHNSAAGSSSGGR 42
>At2g46910.1 68415.m05858 plastid-lipid associated protein PAP /
fibrillin family protein contains Pfam profile PF04755:
PAP_fibrillin
Length = 284
Score = 28.7 bits (61), Expect = 1.9
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -2
Query: 168 GGRCKNILKYSIPSLVRYQ-*KCLQANCVFDITSGLE*LHSFDNLEVRNL 22
GG +N++++S+PSL+ Q L FD S F+ + VRN+
Sbjct: 153 GGIIRNVVQWSLPSLLEEQEGATLVVTAKFDKVSSRNIYLQFEEISVRNI 202
>At4g33850.1 68417.m04803 glycosyl hydrolase family 10 protein
similar to tapetum specific protein GI:3885492 from [Zea
mays]
Length = 352
Score = 28.3 bits (60), Expect = 2.5
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 34 LQVIKAMQSLKSRGYVKDTVCLEALLLVPN 123
LQ++K +QS++ GY++ + LE+ PN
Sbjct: 225 LQMLKELQSIRISGYIRLAIGLESHFKTPN 254
>At3g10770.2 68416.m01297 expressed protein
Length = 325
Score = 27.1 bits (57), Expect = 5.7
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -2
Query: 318 IMRCNTRGSRSTSVCRSVLSRGAGASGRPTGPRRTVSVRTERLSVAGTISGGRCKNILK 142
I+ T SR VC S + +GRP G + + R +R S G G +N+L+
Sbjct: 89 ILVTKTAESRFPYVCLSEIPVKQPENGRPEGFKIAIKPRPKRGSGCGGSGSGVQQNLLR 147
>At3g10770.1 68416.m01296 expressed protein
Length = 333
Score = 27.1 bits (57), Expect = 5.7
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -2
Query: 318 IMRCNTRGSRSTSVCRSVLSRGAGASGRPTGPRRTVSVRTERLSVAGTISGGRCKNILK 142
I+ T SR VC S + +GRP G + + R +R S G G +N+L+
Sbjct: 89 ILVTKTAESRFPYVCLSEIPVKQPENGRPEGFKIAIKPRPKRGSGCGGSGSGVQQNLLR 147
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,314,308
Number of Sequences: 28952
Number of extensions: 155900
Number of successful extensions: 472
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -