Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00055
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...   107   5e-24
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...   106   1e-23
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy...    29   2.2  
At4g39500.1 68417.m05586 cytochrome P450, putative simialrity to...    29   2.9  
At2g43680.2 68415.m05430 calmodulin-binding family protein simil...    29   3.9  
At2g43680.1 68415.m05429 calmodulin-binding family protein simil...    29   3.9  
At4g39480.1 68417.m05585 cytochrome P450 family protein contains...    28   5.1  
At2g43970.2 68415.m05468 La domain-containing protein contains P...    28   5.1  
At2g43970.1 68415.m05467 La domain-containing protein contains P...    28   5.1  
At5g32410.2 68418.m03816 hypothetical protein                          28   6.8  
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr...    28   6.8  
At5g01010.1 68418.m00001 expressed protein                             28   6.8  

>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score =  107 bits (258), Expect = 5e-24
 Identities = 62/150 (41%), Positives = 77/150 (51%), Gaps = 3/150 (2%)
 Frame = +3

Query: 243 GYWTAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 422
           G   AV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH               
Sbjct: 74  GTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSA 133

Query: 423 XXXXXXXXXXQARGHIIEKIPELPLVV---AEKSRRSTRPNRLSSS*GASRHGLISLRCT 593
                      ARGH IE +PE+PLVV   AE   +++   ++    GA      +    
Sbjct: 134 IAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSI 193

Query: 594 SLSVFVLVRVKCATVRRIQRKGPLIIFNKD 683
            +      + K    R I RKGPL++F  +
Sbjct: 194 GIRPG---KGKMRNRRYISRKGPLVVFGTE 220



 Score = 89.8 bits (213), Expect = 1e-18
 Identities = 44/73 (60%), Positives = 51/73 (69%), Gaps = 2/73 (2%)
 Frame = +1

Query: 43  SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 216
           + ARPLV+V     +  T Q     LP V  AP+RPD+VN VH  +S NSRQPY VSK+A
Sbjct: 5   AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64

Query: 217 GHQTSAESWGTGR 255
           GHQTSAESWGTGR
Sbjct: 65  GHQTSAESWGTGR 77



 Score = 37.9 bits (84), Expect = 0.006
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = +2

Query: 503 SRKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNR 637
           S   + + KT  A+  L+++ A+ D  K   S  +R GKGKMRNR
Sbjct: 161 SDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNR 205


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score =  106 bits (255), Expect = 1e-23
 Identities = 61/150 (40%), Positives = 77/150 (51%), Gaps = 3/150 (2%)
 Frame = +3

Query: 243 GYWTAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 422
           G   AV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH               
Sbjct: 73  GTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSA 132

Query: 423 XXXXXXXXXXQARGHIIEKIPELPLVV---AEKSRRSTRPNRLSSS*GASRHGLISLRCT 593
                      ARGH IE +PE+PLVV   AE   +++   ++    GA      +    
Sbjct: 133 IAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSI 192

Query: 594 SLSVFVLVRVKCATVRRIQRKGPLIIFNKD 683
            +      + K    R I RKGPL+++  +
Sbjct: 193 GIRPG---KGKMRNRRYISRKGPLVVYGTE 219



 Score = 91.9 bits (218), Expect = 4e-19
 Identities = 44/76 (57%), Positives = 55/76 (72%), Gaps = 2/76 (2%)
 Frame = +1

Query: 34  MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 207
           M+ + ARPLV++ +   +  T Q +   LP V  AP+RPD+VN VH  +S NSRQPY VS
Sbjct: 1   MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60

Query: 208 KEAGHQTSAESWGTGR 255
           K+AGHQTSAESWGTGR
Sbjct: 61  KKAGHQTSAESWGTGR 76



 Score = 37.9 bits (84), Expect = 0.006
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = +2

Query: 503 SRKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNR 637
           S   + + KT  A+  L+++ A+ D  K   S  +R GKGKMRNR
Sbjct: 160 SDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNR 204


>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
           cytochrome P450 GI:4688670 from [Catharanthus roseus]
          Length = 497

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/49 (32%), Positives = 29/49 (59%)
 Frame = +1

Query: 58  LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 204
           LV +++  SE+++    PLPF  K+P +PD++   H  +  NS+   C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397


>At4g39500.1 68417.m05586 cytochrome P450, putative simialrity to
           cytochrome P450 CYP86A1, Arabidopsis thaliana,
           EMBL:X90458
          Length = 469

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 509 KVQEINKTKQAVIFLRRLKA-WSDILKVYKSQRLRAGKGKMRNRPSY 646
           KVQ  +K    +  L R++A W D    +K +R  + KG +R+ PS+
Sbjct: 356 KVQANSKIIICLYALGRMRAVWGDDALEFKPERWVSDKGSLRHEPSF 402


>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 669

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 332 WWTYVRPHEALAALAPSRQPPTAESGLGGSRCC 430
           WW +V     LA+ APS   P  +  L  SR C
Sbjct: 465 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC 497


>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 668

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 332 WWTYVRPHEALAALAPSRQPPTAESGLGGSRCC 430
           WW +V     LA+ APS   P  +  L  SR C
Sbjct: 464 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC 496


>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 989

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 109 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 204
           P+PF  K+P +PD++   H  +  NSR  +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414



 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 109 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 204
           P+PF  K+P +PD++   H  +  NS+  +C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887


>At2g43970.2 68415.m05468 La domain-containing protein contains Pfam
           profile PF05383: La domain
          Length = 529

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 291 YHHHGHAEFGRQPSSTP 241
           +HHH H + G QPS+ P
Sbjct: 474 HHHHHHHQVGTQPSNNP 490


>At2g43970.1 68415.m05467 La domain-containing protein contains Pfam
           profile PF05383: La domain
          Length = 545

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 291 YHHHGHAEFGRQPSSTP 241
           +HHH H + G QPS+ P
Sbjct: 490 HHHHHHHQVGTQPSNNP 506


>At5g32410.2 68418.m03816 hypothetical protein
          Length = 123

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 8/39 (20%)
 Frame = -1

Query: 345 TYVHHDTCY--RRHP------DRTYEYHHHGHAEFGRQP 253
           T VHH T +  RRH       D   EYHH  H+ F R P
Sbjct: 26  TLVHHSTPWSSRRHHHFSPPLDTLVEYHHLYHSTFTRSP 64


>At5g17650.1 68418.m02069 glycine/proline-rich protein
           glycine/proline-rich protein GPRP - Arabidopsis
           thaliana, EMBL:X84315
          Length = 173

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 336 HHDTCYRRHPDRTYEYHHHGHAEF 265
           HH   Y  H    Y Y +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145


>At5g01010.1 68418.m00001 expressed protein
          Length = 409

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = -1

Query: 234 STGLVTSLLAHAVGLPRVLGHRNVNIIDQVR-TDGRLEHEREGLG 103
           +TG+  +L+ + VG+P+VL    ++ I Q+   DG +E +RE  G
Sbjct: 203 ATGVYKTLVKYLVGVPQVL----LDFIRQINDDDGPMEEQRERYG 243


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,623,896
Number of Sequences: 28952
Number of extensions: 304070
Number of successful extensions: 1052
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)