Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00051X
         (336 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07790.1 68418.m00892 expressed protein                             31   0.14 
At2g21300.1 68415.m02535 kinesin motor family protein contains P...    27   2.4  
At4g03610.1 68417.m00496 phosphonate metabolism protein-related ...    27   3.1  
At4g15840.1 68417.m02409 expressed protein                             27   4.1  
At4g27370.1 68417.m03929 myosin family protein contains Pfam pro...    26   7.2  
At3g20820.1 68416.m02633 leucine-rich repeat family protein cont...    25   9.5  
At3g10070.1 68416.m01207 transcription initiation factor IID (TF...    25   9.5  

>At5g07790.1 68418.m00892 expressed protein
          Length = 616

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +1

Query: 91  SSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILREIKW 252
           S  +  KR RR   +   G+   +S + A   +S  SGR+ + C TS+ + + W
Sbjct: 411 SGRVKRKRSRRISLVAE-GNYQQVSAAEAIVDISRKSGRETAACITSLSKNLLW 463


>At2g21300.1 68415.m02535 kinesin motor family protein contains Pfam
           profile: kinesin motor domain PF00225
          Length = 862

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +1

Query: 70  KLKEHGASSCISGKRGRRCCNIWHWGSVDSISG 168
           K+ EH ASS       R   N W  GSV  ISG
Sbjct: 425 KMVEHDASSKAGTPHFRNRTNKWEDGSVSEISG 457


>At4g03610.1 68417.m00496 phosphonate metabolism protein-related
           weak similarity to PhnP protein. (Swiss-Prot:P16692)
           [Escherichia coli]
          Length = 290

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = -2

Query: 164 LMESTDPQCHILQHRRPRLPLMQLEAPCS----FNFCSLRAIRRYKSYYVD*G 18
           L++ +DP CH+       LP +     C+     ++CS     R+K   +D G
Sbjct: 30  LLQPSDPPCHVCSQSLSLLPHLNPNYRCNTSLLIDYCSKEEDGRHKYILIDVG 82


>At4g15840.1 68417.m02409 expressed protein
          Length = 660

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 160 ISGSRARFQLSGNSGRKHSRCCTSIL 237
           +SGS   FQ S NS     R CTS++
Sbjct: 115 VSGSNLVFQQSSNSQTNFGRPCTSVV 140


>At4g27370.1 68417.m03929 myosin family protein contains Pfam
           profiles: PF00063 myosin head (motor domain), PF00612 IQ
           calmodulin-binding motif
          Length = 1126

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = +1

Query: 70  KLKEH-GASSCISGKRGR 120
           KLK+H  A+SC  G+RGR
Sbjct: 610 KLKQHLNANSCFKGERGR 627


>At3g20820.1 68416.m02633 leucine-rich repeat family protein
           contains similarity to Cf-2.1 [Lycopersicon
           pimpinellifolium] gi|1184075|gb|AAC15779; contains
           leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611
          Length = 365

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 115 GRRCCNIWHWGSVDSISGSRARFQLSGNS 201
           G+ CC+ W+  S DS++   A   L G S
Sbjct: 48  GQDCCHNWYGISCDSLTHRVADINLRGES 76


>At3g10070.1 68416.m01207 transcription initiation factor IID
           (TFIID) subunit A family protein similar to hypothetical
           protein GB:CAB10099 [Schizosaccharomyces pombe];
           contains Pfam profile PF03847: Transcription initiation
           factor TFIID subunit A
          Length = 539

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 335 MSRPVMLASPHGVGLPWQQQSTVT 264
           +S+P++   P     PWQQ S+ T
Sbjct: 83  LSQPLVRPPPQAYSRPWQQHSSYT 106


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,695,378
Number of Sequences: 28952
Number of extensions: 116790
Number of successful extensions: 290
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 389454624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)