Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00048
(410 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) seve... 127 3e-30
At2g40590.1 68415.m05007 40S ribosomal protein S26 (RPS26B) 125 1e-29
At2g40510.1 68415.m04999 40S ribosomal protein S26 (RPS26A) 125 1e-29
At5g44640.1 68418.m05470 glycosyl hydrolase family 1 protein con... 29 1.6
At2g25630.1 68415.m03072 glycosyl hydrolase family 1 protein con... 29 1.6
At2g44450.1 68415.m05527 glycosyl hydrolase family 1 protein con... 28 2.1
At3g43180.1 68416.m04557 zinc finger (C3HC4-type RING finger) fa... 27 3.7
At5g58450.1 68418.m07320 expressed protein predicted proteins fr... 27 4.9
At4g21030.1 68417.m03042 Dof-type zinc finger domain-containing ... 27 4.9
At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal hydrolase-r... 27 4.9
At5g42260.1 68418.m05144 glycosyl hydrolase family 1 protein con... 27 6.5
At5g01770.1 68418.m00096 transducin family protein / WD-40 repea... 26 8.6
>At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) several
40S ribosomal protein S26
Length = 130
Score = 127 bits (307), Expect = 3e-30
Identities = 53/78 (67%), Positives = 64/78 (82%)
Frame = +3
Query: 21 MTRKXRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVDSAAVRDINDASVYP 200
MT K RNGGR KH RGHVK +RC+NC +C PKDKAIK+F++RNIV+ AA+RD+ +ASVY
Sbjct: 1 MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60
Query: 201 MFQLPKLYAKLHYCVSCA 254
+ LPKLYAK YCVSCA
Sbjct: 61 GYTLPKLYAKTQYCVSCA 78
Score = 34.3 bits (75), Expect = 0.032
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +2
Query: 254 LHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQ 358
+HS VVR RS+ +RR+RTPP R P+ Q
Sbjct: 79 IHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPAQ 113
>At2g40590.1 68415.m05007 40S ribosomal protein S26 (RPS26B)
Length = 131
Score = 125 bits (302), Expect = 1e-29
Identities = 52/78 (66%), Positives = 63/78 (80%)
Frame = +3
Query: 21 MTRKXRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVDSAAVRDINDASVYP 200
MT K RNGGR KH RGHV +RC+NC +C PKDKAIK+F++RNIV+ AA+RD+ +ASVY
Sbjct: 1 MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60
Query: 201 MFQLPKLYAKLHYCVSCA 254
+ LPKLYAK YCVSCA
Sbjct: 61 GYTLPKLYAKTQYCVSCA 78
Score = 33.1 bits (72), Expect = 0.075
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +2
Query: 254 LHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQ 358
+HS VVR RS+ +RR+RTPP R P+ Q
Sbjct: 79 IHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPKPGQ 113
>At2g40510.1 68415.m04999 40S ribosomal protein S26 (RPS26A)
Length = 133
Score = 125 bits (302), Expect = 1e-29
Identities = 52/78 (66%), Positives = 63/78 (80%)
Frame = +3
Query: 21 MTRKXRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVDSAAVRDINDASVYP 200
MT K RNGGR KH RGHV +RC+NC +C PKDKAIK+F++RNIV+ AA+RD+ +ASVY
Sbjct: 1 MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60
Query: 201 MFQLPKLYAKLHYCVSCA 254
+ LPKLYAK YCVSCA
Sbjct: 61 GYTLPKLYAKTQYCVSCA 78
Score = 33.1 bits (72), Expect = 0.075
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +2
Query: 254 LHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQ 358
+HS VVR RS+ +RR+RTPP R P+ Q
Sbjct: 79 IHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPGQ 113
>At5g44640.1 68418.m05470 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to Non-cyanogenic beta-glucosidase precursor
(SP:P26204) [Trifolium repens]
Length = 507
Score = 28.7 bits (61), Expect = 1.6
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -2
Query: 229 LAYNLGSWNIGYTEASLISLTAAESTMFLITNFLIALSFGTHRAQFVH 86
+A N G WN+ YTE++ L AA + F F+ L G + V+
Sbjct: 268 IALNAG-WNLPYTESAEDRLAAARAMAFTFDYFMEPLVTGKYPVDMVN 314
>At2g25630.1 68415.m03072 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to amygdalin hydrolase isoform AH I precursor
(GI:16757966) [Prunus serotina]
Length = 489
Score = 28.7 bits (61), Expect = 1.6
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -2
Query: 229 LAYNLGSWNIGYTEASLISLTAAESTMFLITNFLIALSFGTHRAQFVH 86
+A N G WN+ YTE++ L AA + F F+ L G + V+
Sbjct: 267 IALNAG-WNLPYTESAEDRLAAARAMAFTFDYFMEPLVTGKYPVDMVN 313
>At2g44450.1 68415.m05527 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to amygdalin hydrolase isoform AH I precursor
(GI:16757966) [Prunus serotina]
Length = 506
Score = 28.3 bits (60), Expect = 2.1
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 229 LAYNLGSWNIGYTEASLISLTAAESTMFLITNFLIALSFGTHRAQFVH 86
+A N G WN+ YTE+ L AA + F F+ L G + V+
Sbjct: 268 IALNAG-WNLPYTESPKDRLAAARAMAFTFDYFMEPLVTGKYPVDMVN 314
>At3g43180.1 68416.m04557 zinc finger (C3HC4-type RING finger)
family protein contains Zinc finger, C3HC4 type (RING
finger) signature, PROSITE:PS00518
Length = 191
Score = 27.5 bits (58), Expect = 3.7
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +3
Query: 69 HVKAVRCTNCARCVPKDKAIKKFVIRNIVDSAAVRDINDASVYPMFQLPKLYAKLHYCVS 248
H+++ C P D+ K R+ + + +D+S+Y + + KL + V+
Sbjct: 90 HIESRLLEGCVPRCPHDQCEYKLTFRSCANLLTPKTKSDSSIYLLLKTLKLGDVVSNAVN 149
Query: 249 -CASTAKLSG 275
ASTAK G
Sbjct: 150 PFASTAKFHG 159
>At5g58450.1 68418.m07320 expressed protein predicted proteins from
D.melanogaster, C.elegans and S.pombe
Length = 1065
Score = 27.1 bits (57), Expect = 4.9
Identities = 14/65 (21%), Positives = 28/65 (43%)
Frame = +1
Query: 133 SS*LGTS*ILRRSEILTMPLYTQCXXXXXXXXXXXXACHAPPQQSCQEQIEERQKNPYSS 312
S+ +G+ + ++ T P +T C + PP+++ +E+ EE K
Sbjct: 711 SNEIGSRTLKFNEDMQTRPWWTPCPEKNYLLGPFEEISYCPPKENVKEEREENMKRAIQR 770
Query: 313 QE*LP 327
+ LP
Sbjct: 771 KSLLP 775
>At4g21030.1 68417.m03042 Dof-type zinc finger domain-containing
protein prolamin box binding factor, Zea mays,
PID:g2393775
Length = 194
Score = 27.1 bits (57), Expect = 4.9
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +3
Query: 84 RCTNCARCVPKDKAIKKFVIRNIVDSAAVRDINDASVYPM 203
+C NC RC ++ + I D + + I+ +SV M
Sbjct: 47 KCKNCCRCWTHGGVLRNIPVTGICDKSNLPKIDQSSVSQM 86
>At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1136
Score = 27.1 bits (57), Expect = 4.9
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +3
Query: 78 AVRCTNCARCVPKDKAIKKFVIRNIVDSAAVRDINDASVYPMFQLPKL 221
++ C C VP+ +K + AVRD+ + ++ P F +P L
Sbjct: 572 SILCDRCEEIVPEISLARKIFV------CAVRDVFEGALLPTFDVPDL 613
>At5g42260.1 68418.m05144 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to amygdalin hydrolase isoform AH I precursor
(GI:16757966) [Prunus serotina]
Length = 507
Score = 26.6 bits (56), Expect = 6.5
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -2
Query: 229 LAYNLGSWNIGYTEASLISLTAAESTMFLITNFLIALSFGTHRAQFVH 86
+A N G WN+ Y+E++ L AA + F F+ L G + V+
Sbjct: 268 IALNAG-WNLPYSESAEDRLAAARAMAFTFDYFMEPLVTGKYPIDMVN 314
>At5g01770.1 68418.m00096 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein mip1
(SP:P87141) [Schizosaccharomyces pombe]
Length = 1354
Score = 26.2 bits (55), Expect = 8.6
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +3
Query: 63 RGHVKAVRCTNCARCVPKDKAIKKFVIRNIVD 158
RGH+ +R + + P+ +A+ F++ IVD
Sbjct: 539 RGHIYFIRFLDSSDAFPEQRAMAAFILAVIVD 570
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,644,882
Number of Sequences: 28952
Number of extensions: 137616
Number of successful extensions: 402
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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