Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00045
(714 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi... 109 2e-24
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi... 109 2e-24
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi... 109 2e-24
At1g76260.1 68414.m08855 transducin family protein / WD-40 repea... 29 3.1
At5g44770.1 68418.m05487 DC1 domain-containing protein contains ... 28 7.1
At5g22400.1 68418.m02613 rac GTPase activating protein, putative... 28 7.1
At2g02700.1 68415.m00210 DC1 domain-containing protein contains ... 27 9.3
>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
to ribosomal protein GI:806279 from [Arabidopsis
thaliana]
Length = 390
Score = 109 bits (262), Expect = 2e-24
Identities = 51/85 (60%), Positives = 64/85 (75%)
Frame = +3
Query: 255 HHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYXEVNNDFVMIK 434
HHRTEMNKK+YR+G K G+ ++A TEYD +EK ITPMGGFPHY V D++MIK
Sbjct: 276 HHRTEMNKKVYRVG-----KVGQET-HSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMIK 329
Query: 435 GCCMGPKKRIITLRKSLRVHTKRAA 509
GCC+GPKKR++TLR++L T R A
Sbjct: 330 GCCVGPKKRVVTLRQTLLKQTSRLA 354
Score = 107 bits (258), Expect = 5e-24
Identities = 49/85 (57%), Positives = 59/85 (69%)
Frame = +1
Query: 1 IEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTXKLPRKTHKGLR 180
I KV +A EK +PVD++F +DEMID I +RW +LPRKTH+GLR
Sbjct: 191 IAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLR 250
Query: 181 KVACIGAWHPSRVSFTVARAGQKGY 255
KVACIGAWHP+RVS+TVARAGQ GY
Sbjct: 251 KVACIGAWHPARVSYTVARAGQNGY 275
Score = 44.4 bits (100), Expect = 8e-05
Identities = 21/35 (60%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Frame = +2
Query: 509 LEKINLKFIDTSSKFGHGRFQTPADKAAFMG-TLK 610
+E+I LKFID +S GHGRFQT +KA F G T+K
Sbjct: 355 MEEIKLKFIDAASNGGHGRFQTSQEKAKFYGRTIK 389
>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 109 bits (261), Expect = 2e-24
Identities = 51/85 (60%), Positives = 63/85 (74%)
Frame = +3
Query: 255 HHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYXEVNNDFVMIK 434
HHRTE+NKKIYR+G K G + A TEYD +EK +TPMGGFPHY V +D++MIK
Sbjct: 276 HHRTELNKKIYRLG-----KVGTEA-HTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIK 329
Query: 435 GCCMGPKKRIITLRKSLRVHTKRAA 509
GCC+GPKKR++TLR+SL T R A
Sbjct: 330 GCCVGPKKRVVTLRQSLLTQTSRLA 354
Score = 108 bits (259), Expect = 4e-24
Identities = 53/104 (50%), Positives = 66/104 (63%)
Frame = +1
Query: 1 IEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTXKLPRKTHKGLR 180
I KV +A EK IP+++VF +DEMID I +RW +LPRKTH+GLR
Sbjct: 191 IAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLR 250
Query: 181 KVACIGAWHPSRVSFTVARAGQKGYITVLK*TRKSIVLDKESTK 312
KVACIGAWHP+RVS+TVARAGQ GY + +K L K T+
Sbjct: 251 KVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLGKVGTE 294
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/35 (60%), Positives = 25/35 (71%)
Frame = +2
Query: 509 LEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 613
LE+I LKFIDT+S FGHGRFQT +K F + K
Sbjct: 355 LEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVTK 389
>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 109 bits (261), Expect = 2e-24
Identities = 51/85 (60%), Positives = 63/85 (74%)
Frame = +3
Query: 255 HHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYXEVNNDFVMIK 434
HHRTE+NKKIYR+G K G + A TEYD +EK +TPMGGFPHY V +D++MIK
Sbjct: 276 HHRTELNKKIYRLG-----KVGTEA-HTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIK 329
Query: 435 GCCMGPKKRIITLRKSLRVHTKRAA 509
GCC+GPKKR++TLR+SL T R A
Sbjct: 330 GCCVGPKKRVVTLRQSLLTQTSRLA 354
Score = 108 bits (259), Expect = 4e-24
Identities = 53/104 (50%), Positives = 66/104 (63%)
Frame = +1
Query: 1 IEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTXKLPRKTHKGLR 180
I KV +A EK IP+++VF +DEMID I +RW +LPRKTH+GLR
Sbjct: 191 IAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLR 250
Query: 181 KVACIGAWHPSRVSFTVARAGQKGYITVLK*TRKSIVLDKESTK 312
KVACIGAWHP+RVS+TVARAGQ GY + +K L K T+
Sbjct: 251 KVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLGKVGTE 294
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/35 (60%), Positives = 25/35 (71%)
Frame = +2
Query: 509 LEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 613
LE+I LKFIDT+S FGHGRFQT +K F + K
Sbjct: 355 LEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVTK 389
>At1g76260.1 68414.m08855 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to retinoblastoma A associated protein; RbAp48
(GI:3309245) [Xenopus laevis]
Length = 350
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/77 (22%), Positives = 34/77 (44%)
Frame = +1
Query: 160 KTHKGLRKVACIGAWHPSRVSFTVARAGQKGYITVLK*TRKSIVLDKESTKRMAKLLKTM 339
K G+R GAW+P V+ A + L+ +K+ +++ + + LK
Sbjct: 162 KESAGMRHSLSGGAWNPHDVNSVAATSESSIQFWDLRTMKKNNSIERAHVRNVDYNLKRE 221
Query: 340 HLLSMTCLRNPLHQWEV 390
H+L + +H W++
Sbjct: 222 HILVSADDESGIHLWDL 238
>At5g44770.1 68418.m05487 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 541
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +3
Query: 372 ITPMGGFPHYXEVNNDFVMIKGCCMGPKKRIITLRK---SLRVH 494
I P+ P Y V DF + KGC P+K+ L SLR H
Sbjct: 286 ILPINDDPCYKCVECDFCLHKGCASLPRKKAHFLHNHKISLRAH 329
>At5g22400.1 68418.m02613 rac GTPase activating protein, putative
similar to rac GTPase activating protein 1 [Lotus
japonicus] GI:3695059; contains Pfam profile PF00620:
RhoGAP domain
Length = 466
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 519 STSNSLTPRPSSVMVDSRRRLTRLHSWVHSRR 614
S+S+S +P PSS+ SR T L S H+RR
Sbjct: 17 SSSSSSSPSPSSLSYASRSNATLLISSDHNRR 48
>At2g02700.1 68415.m00210 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 499
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Frame = +3
Query: 285 YRIGQGI--HKKDGKVIK---NNASTEYDLSEKSITPMGGFPHYXEVNNDFVMIKGCCMG 449
YRI GI H G +K N E + + + P+ Y V DF++ + C
Sbjct: 349 YRIADGIILHFSHGCHMKFETNGVYKENEFCQACVLPINEENFYVCVKCDFILHEKCADA 408
Query: 450 PKKRI 464
P+K++
Sbjct: 409 PRKKV 413
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,076,066
Number of Sequences: 28952
Number of extensions: 334697
Number of successful extensions: 835
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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