Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00042
(605 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g20130.1 68417.m02945 ribulose-1,5 bisphosphate carboxylase/o... 33 0.11
At3g49310.1 68416.m05391 expressed protein contains PF05631: Pro... 28 4.2
At1g54840.2 68414.m06258 expressed protein 28 4.2
At1g54840.1 68414.m06257 expressed protein 28 4.2
At1g60590.1 68414.m06820 polygalacturonase, putative / pectinase... 27 7.3
At2g14770.2 68415.m01669 Ulp1 protease family protein similar to... 27 9.6
At1g62950.1 68414.m07108 leucine-rich repeat transmembrane prote... 27 9.6
At1g34740.1 68414.m04319 Ulp1 protease family protein contains P... 27 9.6
>At4g20130.1 68417.m02945 ribulose-1,5 bisphosphate
carboxylase/oxygenase large subunit
N-methyltransferase-related contains weak similarity to
Swiss-Prot:P94026 ribulose-1,5 bisphosphate
carboxylase/oxygenase large subunit N-
methyltransferase, chloroplast precursor (Ribulose-
bisphosphate-carboxylase]-lysine N-methyltransferase,
RuBisCO methyltransferase, RuBisco LSMT, rbcMT)
[Nicotiana tabacum]
Length = 483
Score = 33.5 bits (73), Expect = 0.11
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Frame = -1
Query: 443 VHIISCISLYGILGRYWQYYHKSILS-----VDFSLLSYVSCLQEHSERNLPKIEPLFFI 279
+H+ S +S++ I G +YYH S LS VD ++++ L S+ +LP I
Sbjct: 357 IHLNSFLSVFNIYGLPEEYYHDSELSRGDTFVDGAVIAAARTLPTWSDIDLPPIPSAERK 416
Query: 278 GVMKMTMFCRQNLQNHILTKKKTQ 207
V ++ CR+ L + T ++ Q
Sbjct: 417 AVKELQDECRKMLAEYPTTAEQDQ 440
>At3g49310.1 68416.m05391 expressed protein contains PF05631:
Protein of unknown function (DUF791)
Length = 460
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 33 FEASIWTFIFLFISMLSASIESFKISFV 116
FEAS++TF+FL+ LS + E FV
Sbjct: 259 FEASMYTFVFLWTPALSPNDEEIPHGFV 286
>At1g54840.2 68414.m06258 expressed protein
Length = 268
Score = 28.3 bits (60), Expect = 4.2
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +2
Query: 218 FLLKYDFGDFVYKTLSFS*HQ*KKAAQFLVDFVRNVLVNNSHNSIMKSLRIKLICDNIAN 397
FLL + G + L H+ K++A F + ++NV+V+ S+MK ++ + +I
Sbjct: 36 FLLHFIIGTYFGPDLRKQHHRPKQSA-FQIQALKNVVVDELSGSLMKRAELERVYYHIIR 94
Query: 398 N 400
N
Sbjct: 95 N 95
>At1g54840.1 68414.m06257 expressed protein
Length = 349
Score = 28.3 bits (60), Expect = 4.2
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +2
Query: 218 FLLKYDFGDFVYKTLSFS*HQ*KKAAQFLVDFVRNVLVNNSHNSIMKSLRIKLICDNIAN 397
FLL + G + L H+ K++A F + ++NV+V+ S+MK ++ + +I
Sbjct: 36 FLLHFIIGTYFGPDLRKQHHRPKQSA-FQIQALKNVVVDELSGSLMKRAELERVYYHIIR 94
Query: 398 N 400
N
Sbjct: 95 N 95
>At1g60590.1 68414.m06820 polygalacturonase, putative / pectinase,
putative similar to polygalacturonase PG1 (GI:5669846),
PG2 (GI:5669848) from [Glycine max]; contains PF00295:
Glycosyl hydrolases family 28 (polygalacturonases)
Length = 540
Score = 27.5 bits (58), Expect = 7.3
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = -1
Query: 515 TKNVKSVRKIIM*YLRLVVQLLRNVHIISCISLYGILGRYWQYYHKSILSVDFSLLS 345
T+ ++R I M + LV L+ + + +CI+ G R+W+++H+S S+ SL S
Sbjct: 3 TRESLTLRSITM--MTLVTILVWSATLETCIARRG---RHWRHHHRSSSSLSDSLSS 54
>At2g14770.2 68415.m01669 Ulp1 protease family protein similar to
At3g24380, At5g36840, At5g35010, At3g42740, At4g05290,
At2g14770, At3g43390, At2g05560, At4g08880, At1g34730,
At1g27790, At1g34740, At1g27780, At5g36850, At3g42730,
At1g52020, At3g24390, At4g05280, At1g25886, At4g03300;
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain
Length = 1158
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = -1
Query: 380 KSILSVDFSLLSYVSCLQEHSERNLPKIEPLFFIGVMKMTMFCRQ 246
+ IL F ++ Y Q H +R + F+G M T+F Q
Sbjct: 639 EEILDTGFLIVPYAGSTQSHLDRGNVVVGKTVFLGSMSGTVFVTQ 683
>At1g62950.1 68414.m07108 leucine-rich repeat transmembrane protein
kinase, putative contains protein kinase domains
Length = 890
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +3
Query: 45 IWTFIFLFISMLSASIESFKISFVLIYQIFISF 143
IW +F+F+ ++ S SF S + +I + F
Sbjct: 7 IWVIMFIFVHIIITSSRSFSDSIITEREILLQF 39
>At1g34740.1 68414.m04319 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g27780,
At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
At1g25886, At4g03300
Length = 1383
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = -1
Query: 380 KSILSVDFSLLSYVSCLQEHSERNLPKIEPLFFIGVMKMTMFCRQ 246
+ IL F ++ Y Q H +R + F+G M T+F Q
Sbjct: 576 EEILDTGFLIVPYAGSTQSHLDRGNVVVGKTVFLGSMSGTVFVTQ 620
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,475,265
Number of Sequences: 28952
Number of extensions: 252464
Number of successful extensions: 612
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -