Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00038
         (530 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)       63   1e-10
At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)       63   1e-10
At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)       63   1e-10
At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)...    61   5e-10
At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)...    61   5e-10
At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)       59   2e-09
At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)...    55   3e-08
At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)...    52   3e-07
At5g40720.1 68418.m04942 expressed protein contains Pfam profile...    27   7.9  

>At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)
          Length = 115

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 28/56 (50%), Positives = 42/56 (75%)
 Frame = +3

Query: 87  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIA 254
           M+ VAAYLLAVL GK +P +AD++ IL SVG E +  +++ ++ E+ GKD+ +LIA
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIA 56



 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +2

Query: 254 AGREKLSSMPVGGG 295
           AGREKL+S+P GGG
Sbjct: 57  AGREKLASVPSGGG 70


>At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)
          Length = 115

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 28/56 (50%), Positives = 42/56 (75%)
 Frame = +3

Query: 87  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIA 254
           M+ VAAYLLAVL GK +P +AD++ IL SVG E +  +++ ++ E+ GKD+ +LIA
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIA 56



 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +2

Query: 254 AGREKLSSMPVGGG 295
           AGREKL+S+P GGG
Sbjct: 57  AGREKLASVPSGGG 70


>At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)
          Length = 115

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 28/56 (50%), Positives = 42/56 (75%)
 Frame = +3

Query: 87  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIA 254
           M+ VAAYLLAVL GK +P +AD++ IL SVG E +  +++ ++ E+ GKD+ +LIA
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIA 56



 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +2

Query: 254 AGREKLSSMPVGGG 295
           AGREKL+S+P GGG
Sbjct: 57  AGREKLASVPSGGG 70


>At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)
           acidic ribosomal protein P2, maize,  PIR:S54179
          Length = 111

 Score = 60.9 bits (141), Expect = 5e-10
 Identities = 25/56 (44%), Positives = 42/56 (75%)
 Frame = +3

Query: 87  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIA 254
           M+  AA+LLAVLGG   P+A +++ I+ +VG + DGE ++ ++ E++GKD+ +LIA
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIA 56


>At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)
           acidic ribosomal protein P2, maize,  PIR:S54179
          Length = 111

 Score = 60.9 bits (141), Expect = 5e-10
 Identities = 25/56 (44%), Positives = 42/56 (75%)
 Frame = +3

Query: 87  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIA 254
           M+  AA+LLAVLGG   P+A +++ I+ +VG + DGE ++ ++ E++GKD+ +LIA
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIA 56


>At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)
          Length = 115

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 26/56 (46%), Positives = 40/56 (71%)
 Frame = +3

Query: 87  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIA 254
           M+ VAA+LLAVL GK +P   D++ IL SVG E +  +++ ++ E+ GKD+ +LIA
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIA 56



 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +2

Query: 254 AGREKLSSMPVGGG 295
           AGREKL+S+P GGG
Sbjct: 57  AGREKLASVPSGGG 70


>At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)
           acidic ribosomal protein P2, Parthenium
           argentatum,SWISSPROT:RLA2_PARAR
          Length = 114

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 27/56 (48%), Positives = 37/56 (66%)
 Frame = +3

Query: 87  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIA 254
           M+ VAAYLLA L G   P+ AD++KI+ SVG E D EK+    + +  +DV +LIA
Sbjct: 1   MKVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIA 56


>At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)
           similar to acidic ribosomal protein P2b (rpp2b)
           GB:U62753 GI:2431770 from [Zea mays]
          Length = 115

 Score = 51.6 bits (118), Expect = 3e-07
 Identities = 25/56 (44%), Positives = 36/56 (64%)
 Frame = +3

Query: 87  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIA 254
           M+ +AA+LLA LGG   P + D++KIL SVG E D  K+  + + +   DV +LIA
Sbjct: 1   MKVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIA 56


>At5g40720.1 68418.m04942 expressed protein contains Pfam profile
           PF01697: Domain of unknown function
          Length = 583

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 8   FFLVDVCSRRTLFFRHYTFRVN*DLKNALRGRVFTGCAGWQD 133
           F  VDV  + T+   HY ++V    K   + RV T  A WQ+
Sbjct: 456 FAFVDV-DKSTMVINHYKYQVWDIFKEKFKRRVATYVADWQN 496


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,690,492
Number of Sequences: 28952
Number of extensions: 136622
Number of successful extensions: 367
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)