Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00036
         (399 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06290.1 68418.m00705 2-cys peroxiredoxin, chloroplast, putat...    86   9e-18
At3g11630.1 68416.m01425 2-cys peroxiredoxin, chloroplast (BAS1)...    85   1e-17
At1g48130.1 68414.m05371 peroxiredoxin (PER1) / rehydrin, putati...    33   0.093
At3g55120.1 68416.m06121 chalcone-flavanone isomerase / chalcone...    30   0.49 
At5g18520.1 68418.m02187 expressed protein                             27   6.1  
At3g09570.1 68416.m01137 expressed protein                             26   8.0  

>At5g06290.1 68418.m00705 2-cys peroxiredoxin, chloroplast, putative
           very strong similarity to SP|Q96291 2-cys peroxiredoxin
           BAS1, chloroplast precursor {Arabidopsis thaliana};
           contains Pfam profile: PF00578 AhpC/TSA (alkyl
           hydroperoxide reductase and thiol-specific antioxidant)
           family
          Length = 273

 Score = 85.8 bits (203), Expect = 9e-18
 Identities = 38/74 (51%), Positives = 55/74 (74%), Gaps = 1/74 (1%)
 Frame = +1

Query: 1   ETGIPFRGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKH-GEVCPANWRPG 177
           + GI  RGLFIID +  ++  TIN+L +GRSV+ET+R +QA Q+  ++  EVCPA W+PG
Sbjct: 196 DQGIALRGLFIIDKEGVIQHSTINNLGIGRSVDETMRTLQALQYVQENPDEVCPAGWKPG 255

Query: 178 AKTIKPDTKAAQEY 219
            K++KPD K ++EY
Sbjct: 256 EKSMKPDPKLSKEY 269


>At3g11630.1 68416.m01425 2-cys peroxiredoxin, chloroplast (BAS1)
           identical to SP|Q96291 2-cys peroxiredoxin BAS1,
           chloroplast precursor {Arabidopsis thaliana}; contains
           Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide
           reductase and thiol-specific antioxidant) family
          Length = 266

 Score = 85.4 bits (202), Expect = 1e-17
 Identities = 38/74 (51%), Positives = 55/74 (74%), Gaps = 1/74 (1%)
 Frame = +1

Query: 1   ETGIPFRGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKH-GEVCPANWRPG 177
           + GI  RGLFIID +  ++  TIN+L +GRSV+ET+R +QA Q+  ++  EVCPA W+PG
Sbjct: 189 DQGIALRGLFIIDKEGVIQHSTINNLGIGRSVDETMRTLQALQYIQENPDEVCPAGWKPG 248

Query: 178 AKTIKPDTKAAQEY 219
            K++KPD K ++EY
Sbjct: 249 EKSMKPDPKLSKEY 262


>At1g48130.1 68414.m05371 peroxiredoxin (PER1) / rehydrin, putative
           identical to peroxiredoxin (Rehydrin homolog)
           [Arabidopsis thaliana] SWISS-PROT:O04005; contains Pfam
           profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase
           and thiol-specific antioxidant) family
          Length = 216

 Score = 32.7 bits (71), Expect = 0.093
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +1

Query: 13  PFRGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGE--VCPANWRP 174
           P R L I+     ++   +     GR+++E LR + +     KH      P NW+P
Sbjct: 120 PSRALHIVGPDSKIKLSFLYPSTTGRNMDEVLRALDSLLMASKHNNKIATPVNWKP 175


>At3g55120.1 68416.m06121 chalcone-flavanone isomerase / chalcone
           isomerase (CHI) identical to SP|P41088
          Length = 246

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -2

Query: 173 GLQLAGHTSPCLSVNWKACTSRRVSSTDLPTGRSLIVICLRFCLSSMMKSPRKG 12
           G+ L G+  P LSV WK  T+  ++ + +P  R ++       +   MK P  G
Sbjct: 62  GVYLEGNAVPSLSVKWKGKTTEELTES-IPFFREIVTGAFEKFIKVTMKLPLTG 114


>At5g18520.1 68418.m02187 expressed protein
          Length = 440

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 226 DAN*TRHXTKITLFEIAYSMNTSYLYFT 309
           D    R+ +K+TLF   Y +   YLYFT
Sbjct: 345 DGKAARNLSKLTLFRQFYIVVIGYLYFT 372


>At3g09570.1 68416.m01137 expressed protein
          Length = 439

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 226 DAN*TRHXTKITLFEIAYSMNTSYLYFT 309
           D    R+  K+TLF   Y +   YLYFT
Sbjct: 344 DGKAARNLAKLTLFRQFYIVVIGYLYFT 371


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,802,441
Number of Sequences: 28952
Number of extensions: 111700
Number of successful extensions: 382
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)