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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b17r
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) / br...   186   1e-47
At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) / br...   186   1e-47
At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D)           181   3e-46
At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S ...   166   1e-41
At5g47070.1 68418.m05800 protein kinase, putative similar to pro...    32   0.31 
At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) famil...    32   0.41 
At2g02060.1 68415.m00141 calcium-dependent protein kinase-relate...    29   2.2  
At1g62250.2 68414.m07023 expressed protein                             29   2.9  
At1g62250.1 68414.m07022 expressed protein                             29   2.9  
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4...    29   3.8  
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun...    29   3.8  
At1g33880.1 68414.m04200 avirulence-responsive family protein / ...    29   3.8  
At5g64410.1 68418.m08091 oligopeptide transporter OPT family pro...    27   8.8  
At5g12280.1 68418.m01444 hypothetical protein                          27   8.8  

>At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) /
           breast basic conserved protein 1-related (BBC1)
          Length = 206

 Score =  186 bits (453), Expect = 1e-47
 Identities = 92/199 (46%), Positives = 129/199 (64%), Gaps = 1/199 (0%)
 Frame = -1

Query: 632 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXPLRPIVRCPT 453
           K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R              PLRP+V   T
Sbjct: 2   KHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQT 61

Query: 452 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 273
           ++Y+ KVR G+GFTL E++AAG+    A TIGIAVD RR+N+S+E LQ NVQR+K Y+ +
Sbjct: 62  LKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTK 121

Query: 272 LILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQYLR 96
           L++FP + +KV  G++  EE   ATQ++G  +P+ +  P      +T + K+FKA+  +R
Sbjct: 122 LVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIR 181

Query: 95  GARSIAKLVGIRAKRLKDA 39
             R+  +  G RAKR  +A
Sbjct: 182 LERTNKRHAGARAKRAAEA 200


>At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) /
           breast basic conserved protein 1-related (BBC1)
          Length = 206

 Score =  186 bits (453), Expect = 1e-47
 Identities = 92/199 (46%), Positives = 129/199 (64%), Gaps = 1/199 (0%)
 Frame = -1

Query: 632 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXPLRPIVRCPT 453
           K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R              PLRP+V   T
Sbjct: 2   KHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQT 61

Query: 452 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 273
           ++Y+ KVR G+GFTL E++AAG+    A TIGIAVD RR+N+S+E LQ NVQR+K Y+ +
Sbjct: 62  LKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTK 121

Query: 272 LILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQYLR 96
           L++FP + +KV  G++  EE   ATQ++G  +P+ +  P      +T + K+FKA+  +R
Sbjct: 122 LVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIR 181

Query: 95  GARSIAKLVGIRAKRLKDA 39
             R+  +  G RAKR  +A
Sbjct: 182 LERTNKRHAGARAKRAAEA 200


>At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D)
          Length = 206

 Score =  181 bits (441), Expect = 3e-46
 Identities = 92/199 (46%), Positives = 127/199 (63%), Gaps = 1/199 (0%)
 Frame = -1

Query: 632 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXPLRPIVRCPT 453
           K NN+IP+ HF K WQ +VKTWFNQPAR+ RR+  R              PLRP+V   T
Sbjct: 2   KHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQT 61

Query: 452 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 273
           ++Y+ KVRAG+GFTL E++ AG+    A TIGI+VD RR+N+S+E LQ NVQR+K Y+A+
Sbjct: 62  LKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAK 121

Query: 272 LILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQYLR 96
           L++FP + ++V  G++  EE   ATQ++G  MP+           +T D K FKAY  +R
Sbjct: 122 LVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKIR 181

Query: 95  GARSIAKLVGIRAKRLKDA 39
             R+ A+  G RAKR  +A
Sbjct: 182 LERTNARHAGARAKRAAEA 200


>At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S
           ribosomal protein L13 (BBC1), Arabidopsis thaliana,
           gb:X75162
          Length = 206

 Score =  166 bits (403), Expect = 1e-41
 Identities = 85/199 (42%), Positives = 123/199 (61%), Gaps = 1/199 (0%)
 Frame = -1

Query: 632 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXPLRPIVRCPT 453
           K NN+IPNGHF K W+ +VKT FNQPA + RR+  R              P+RP+V   T
Sbjct: 2   KHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQT 61

Query: 452 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 273
           + Y+ KVRAG+GFTL E++AAG+    A TIGI+VD  R+N+S+E  Q NVQR+K Y+A+
Sbjct: 62  LTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAK 121

Query: 272 LILFPKGKKVLK-GEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQYLR 96
           L++FP+  + +K G++ ++E   ATQ++   MP+ +  P      +T D K F AY  +R
Sbjct: 122 LVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIR 181

Query: 95  GARSIAKLVGIRAKRLKDA 39
                 +  G+RAKR  +A
Sbjct: 182 LEGINKRHAGVRAKRAAEA 200


>At5g47070.1 68418.m05800 protein kinase, putative similar to
           protein kinase [Lophopyrum elongatum]
           gi|13022177|gb|AAK11674
          Length = 410

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -1

Query: 257 KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQY 102
           KGK++L+  A E   +  T       P   P+P+S+    TE E+N + + Y
Sbjct: 25  KGKELLQNSAPELTNRSETSSFNLQTPRSLPSPRSIKDLYTEREQNLRVFSY 76


>At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) family
           protein similar to SP|P00952 Tyrosyl-tRNA synthetase (EC
           6.1.1.1) (Tyrosine--tRNA ligase) (TyrRS) {Bacillus
           stearothermophilus}; contains Pfam profiles PF00579:
           tRNA synthetases class I (W and Y), PF01479: S4 domain
          Length = 511

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 364 VRANTGFNPAALISRRVNPLPARTLVWYRTVGHRTIGRNGPAAGR 498
           +R   GF+P A      N L    L W++  GH+ +G  G A GR
Sbjct: 115 LRVYCGFDPTAESLHLGNLLGIIVLSWFQRCGHQAVGLIGGATGR 159


>At2g02060.1 68415.m00141 calcium-dependent protein kinase-related /
           CDPK-related contains TIGRFAM TIGR01557: myb-like
           DNA-binding domain, SHAQKYF class; contains Pfam
           PF00249: Myb-like DNA-binding domain; similar to CDPK
           substrate protein 1; CSP1 (GI:6942190) [Mesembryanthemum
           crystallinum].
          Length = 626

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 502 ATALAFFILFCFLRYRRAGWLNQV 573
           A  L FFI FCF  YR +G+L  V
Sbjct: 266 AVLLLFFICFCFSLYRTSGYLRIV 289


>At1g62250.2 68414.m07023 expressed protein
          Length = 223

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -1

Query: 449 RYHTKVRAGRGFTLREIRAAGLNPVFARTIGIA-VDPRRRNKSVESLQINVQRIKEY 282
           RY T +  G G TL+E  +AG+N   A  +G    D R+   +++   + ++R++ Y
Sbjct: 98  RYRTVIGRGEGETLKEFISAGVN---AYALGCTDEDLRKELMAMKDSGLEIERMENY 151


>At1g62250.1 68414.m07022 expressed protein
          Length = 267

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -1

Query: 449 RYHTKVRAGRGFTLREIRAAGLNPVFARTIGIA-VDPRRRNKSVESLQINVQRIKEY 282
           RY T +  G G TL+E  +AG+N   A  +G    D R+   +++   + ++R++ Y
Sbjct: 98  RYRTVIGRGEGETLKEFISAGVN---AYALGCTDEDLRKELMAMKDSGLEIERMENY 151


>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
           gb|AAF22524.1
          Length = 399

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 344 DLQQFQSFGQILGSILRP 397
           DL+  QS GQI+G +LRP
Sbjct: 52  DLKSLQSVGQIIGEVLRP 69


>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
           p42D, putative similar to 26S proteasome regulatory
           complex subunit p42D [Drosophila melanogaster]
           gi|6434958|gb|AAF08391
          Length = 399

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 344 DLQQFQSFGQILGSILRP 397
           DL+  QS GQI+G +LRP
Sbjct: 52  DLKSLQSVGQIIGEVLRP 69


>At1g33880.1 68414.m04200 avirulence-responsive family protein /
           avirulence induced gene (AIG1) family protein similar to
           AIG1 protein SP:P54120 [Arabidopsis thaliana]; contains
           Pfam PF04548: AIG1 family;
          Length = 234

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -1

Query: 287 EYRARLILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITED 129
           E+  R++ F  G+KVL      +E   A Q+   +  V   + K+  +P TED
Sbjct: 165 EFLMRVLRFCNGRKVLFNNMTNDEGVKAEQVNQVMAHVAAISKKNDEKPYTED 217


>At5g64410.1 68418.m08091 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe};
           contains Pfam profile PF03169: OPT oligopeptide
           transporter protein
          Length = 729

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/63 (25%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = +3

Query: 483 PSCRTWSYGLSFLYSILLSAVSSSWLVKPSFNKSLPILV-EMSIRYHIIPLAHFDVGVLP 659
           P+   W++ + FL   L+S    S+L +    ++ P+++ +++++   +P+ HF   VLP
Sbjct: 28  PTLPVWTFRMWFLG--LISCSLLSFLNQFFSYRTEPLVITQITVQVATLPIGHFLAKVLP 85

Query: 660 RQR 668
           + R
Sbjct: 86  KTR 88


>At5g12280.1 68418.m01444 hypothetical protein
          Length = 419

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 326 SVESLQINVQRIKEYRARLILFPKGKKVLKGEA 228
           +V+SL  NV  +KE  +  I FP  K+ L+G+A
Sbjct: 362 TVQSLSENVASLKEKISGEIQFPTNKQKLRGKA 394


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,395,713
Number of Sequences: 28952
Number of extensions: 293382
Number of successful extensions: 773
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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