Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b13f
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57300.1 68418.m07158 UbiE/COQ5 methyltransferase family prot...    70   1e-12
At3g61400.1 68416.m06875 2-oxoglutarate-dependent dioxygenase, p...    28   5.1  

>At5g57300.1 68418.m07158 UbiE/COQ5 methyltransferase family protein
           similar to ubiquinone biosynthesis methyltransferase
           COQ5 [Saccharomyces cerevisiae][SP|P49017],
           ubiquinone/menaquinone biosynthesis methyltransferase
           ubiE [Escherichia coli][SP|P27851]; contains Pfam
           profile PF01209: methlytransferase, UbiE/COQ5 family
          Length = 288

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 30/56 (53%), Positives = 39/56 (69%)
 Frame = +1

Query: 484 VHEVFETVAGKYDLMNDVMSFGIHRVWKDIFMARLAPMPETNLLDMAGGTGDITFR 651
           V  VF  VA  YD+MNDVMS G+HR+WK+  + +L+P      LD+AGGTGD+ FR
Sbjct: 45  VGNVFTNVASSYDIMNDVMSGGLHRLWKERLVGKLSPFAGMKHLDVAGGTGDVAFR 100


>At3g61400.1 68416.m06875 2-oxoglutarate-dependent dioxygenase,
           putative similar to 2A6 (GI:599622) and tomato ethylene
           synthesis regulatory protein E8 (SP|P10967);
           1-aminocyclopropane-1-carboxylate oxidase homolog -
           Arabidopsis thaliana, PIR:S59548
          Length = 370

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 562 WKDIFMARLAPMPETNLLDMAGGTGDITFRYIKYLQNL 675
           W+D   A +AP P T+  D+    G+I   Y K + NL
Sbjct: 155 WRDTMCAYMAPDPPTS-EDLPEVCGEIMMEYAKEIMNL 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,669,583
Number of Sequences: 28952
Number of extensions: 300077
Number of successful extensions: 695
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)